Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000510-TA|BGIBMGA000510-PA|IPR001660|Sterile alpha motif
SAM, IPR010993|Sterile alpha motif homology
(133 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0260 - 16197522-16197669,16198027-16198130,16198508-161987... 35 0.019
03_03_0107 + 14504065-14504448,14504545-14504922,14506011-145066... 33 0.076
01_05_0265 + 20188160-20188211,20188291-20189019,20189103-201892... 28 2.2
11_02_0149 - 8801675-8804332 28 2.9
10_08_1027 - 22404169-22404807,22406148-22406360,22407062-224072... 28 2.9
12_02_1159 + 26585042-26585441,26585520-26585608,26585670-265857... 27 3.8
12_02_0326 + 17555731-17556387 27 3.8
03_05_0963 + 29252961-29252999,29253108-29253179,29253295-292533... 27 3.8
03_01_0085 + 690618-691012,691114-691193,691775-691959,692363-69... 27 3.8
12_02_1031 + 25537495-25537552,25538774-25538836,25538966-255392... 26 8.7
>09_04_0260 -
16197522-16197669,16198027-16198130,16198508-16198719,
16198795-16198900,16199006-16199119,16199200-16199417,
16199837-16199900,16199982-16200335,16200609-16200767,
16201486-16202907
Length = 966
Score = 35.1 bits (77), Expect = 0.019
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 65 VCEFIRNIPGCAGYADEFLMQEVDGEALLLIKPEHLVMALSMKLGPALKIVACIDSLRPE 124
V E++RN+ G + Y + F+ +EVD E L + E L+ LGP KI + LR +
Sbjct: 495 VMEWLRNL-GLSKYEEIFIKEEVDWETLQWLTEEDLLGMGITSLGPRKKIAHALCELRKK 553
Query: 125 S 125
+
Sbjct: 554 N 554
>03_03_0107 +
14504065-14504448,14504545-14504922,14506011-14506619,
14507110-14507237,14507829-14507832
Length = 500
Score = 33.1 bits (72), Expect = 0.076
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 34 SSNVEMADSQPTSADSAQAKIPNANKWTVAEVCEFIRNIPGCAGYADEFLMQEVDGEALL 93
S NV + + T AD + K+ ++ T EV E I CA YA+ +L + + E ++
Sbjct: 292 SQNVSVTEEYRTPADFVRRKLDSS---TAEEVDESANVIQKCAEYAERYLNETAEEEEVV 348
Query: 94 LI 95
L+
Sbjct: 349 LV 350
>01_05_0265 +
20188160-20188211,20188291-20189019,20189103-20189231,
20189857-20189938,20190034-20190166,20190269-20190340,
20190478-20190573,20190651-20190764,20190838-20191050,
20191144-20191242,20191328-20191488,20191589-20191685,
20191828-20191989,20192068-20192148,20192242-20192320,
20192414-20192550,20192638-20192688,20192776-20192844,
20193583-20193700,20194142-20194197
Length = 909
Score = 28.3 bits (60), Expect = 2.2
Identities = 11/41 (26%), Positives = 23/41 (56%)
Query: 93 LLIKPEHLVMALSMKLGPALKIVACIDSLRPESEQNLHDHD 133
L+ +LVM GP+++++ ++ +R +S +H HD
Sbjct: 789 LVAATRNLVMEKMQLGGPSVRMIELLEEIRKQSSMEVHLHD 829
>11_02_0149 - 8801675-8804332
Length = 885
Score = 27.9 bits (59), Expect = 2.9
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 6/53 (11%)
Query: 84 MQEVDGEALLLIKPEHLVMA---LSMKLGPALKIVACI---DSLRPESEQNLH 130
++EV E LL+ P+HL ++ L + + P L ++A + ++ RP NLH
Sbjct: 590 IEEVGDEGGLLLFPKHLTISLRELRITMNPGLSLLASLPPENNSRPGGLHNLH 642
>10_08_1027 -
22404169-22404807,22406148-22406360,22407062-22407255,
22407422-22407566,22407801-22407875,22408222-22408380,
22408466-22408645,22408756-22409243,22409375-22409738,
22409811-22409943,22410023-22410153,22410247-22410354,
22410451-22410897,22411425-22411514,22411607-22411915,
22412209-22412320,22412488-22412699
Length = 1332
Score = 27.9 bits (59), Expect = 2.9
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
Query: 32 EASSNVEMADSQPTSADSAQAKIPNANKW---TVAEVCEFI-RNIPGCAGYADEFLMQE- 86
EA+ +V AD TSAD + + KW T V + + P + ++ E + +
Sbjct: 345 EATEDVN-ADGSKTSADRRELHVKRTKKWLEETANNVDKLLSATFPHLSIHSSEKVRRSV 403
Query: 87 VDGEALLLIKPEHLVMALSMKLGPALKIVACIDS 120
V+G +LL + + M L L I+AC D+
Sbjct: 404 VNGIRVLLSSCSYTLRKSKMLLVECLCILACDDA 437
>12_02_1159 +
26585042-26585441,26585520-26585608,26585670-26585720,
26586189-26586282,26586451-26586512,26586589-26586671,
26586793-26586901,26587010-26587051,26587152-26587316,
26588165-26588341,26588820-26588984,26589069-26589332
Length = 566
Score = 27.5 bits (58), Expect = 3.8
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 35 SNVEMADSQPTSADSAQAKIPNANKWTVAEVCEFI 69
S++E A S + S++ +P ++T AE+ EFI
Sbjct: 463 SDIEFAKSIASHLHSSEGIVPRDERYTRAEIMEFI 497
>12_02_0326 + 17555731-17556387
Length = 218
Score = 27.5 bits (58), Expect = 3.8
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Query: 36 NVEMADSQPTSADSAQAKIPNAN-KWTVAEVCEFIRNIPGCAGYADEFLMQEVDGEALLL 94
++E + +A +A A+ A + V +V E++ I G YA F EVDGE L
Sbjct: 117 SLEAVQGESVAAAAAAAEEEEAAAEGEVVDVVEWLWGI-GMGRYAAAFEAHEVDGEVLPC 175
Query: 95 IKPEHLVMALSMKLGPALKIVACIDSLRP 123
+ + L +G K+ I L P
Sbjct: 176 LTMDDLRDMGIGAVGARRKLYCAIQRLPP 204
>03_05_0963 +
29252961-29252999,29253108-29253179,29253295-29253369,
29253500-29253583,29253676-29253745,29253842-29253933,
29254082-29254123,29254241-29254627
Length = 286
Score = 27.5 bits (58), Expect = 3.8
Identities = 19/66 (28%), Positives = 29/66 (43%)
Query: 49 SAQAKIPNANKWTVAEVCEFIRNIPGCAGYADEFLMQEVDGEALLLIKPEHLVMALSMKL 108
S+ AK + K + R I GY + ++D A+ KPE LV AL+
Sbjct: 3 SSMAKNSSPFKVVLGSSSPARREILADMGYEFTVMCADIDERAIRREKPEELVKALAEAK 62
Query: 109 GPALKI 114
A+K+
Sbjct: 63 AEAIKL 68
>03_01_0085 +
690618-691012,691114-691193,691775-691959,692363-693320,
693391-693518,693951-694010,694113-694163,694704-694821,
694990-695915,695916-697707,697810-697943,698029-698526
Length = 1774
Score = 27.5 bits (58), Expect = 3.8
Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
Query: 26 DANVKAEASSNVEMADSQ-PTSADSAQAKIPNANKWTVAEVCEFIRNIPGCAGYADEFLM 84
D ++ + V D P + +A +P KW E+ EF+ G D+ +
Sbjct: 314 DCSIATKKVETVTRDDGTLPNKVPTEEASLPVDTKWASPELLEFV----GHMRDGDQSFI 369
Query: 85 QEVDGEALLL 94
+ D +ALLL
Sbjct: 370 SQFDVQALLL 379
>12_02_1031 +
25537495-25537552,25538774-25538836,25538966-25539279,
25539361-25539612,25539698-25540411
Length = 466
Score = 26.2 bits (55), Expect = 8.7
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 24 TRDANVKAEASSNVEMADSQPTSADSAQAKIPNANKWT 61
T + KA + S QP SA ++ + P+ +WT
Sbjct: 343 TESSRAKARSQSAPRQRHDQPISAAASPSPSPSCGEWT 380
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.314 0.129 0.371
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,424,811
Number of Sequences: 37544
Number of extensions: 105772
Number of successful extensions: 209
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 204
Number of HSP's gapped (non-prelim): 10
length of query: 133
length of database: 14,793,348
effective HSP length: 75
effective length of query: 58
effective length of database: 11,977,548
effective search space: 694697784
effective search space used: 694697784
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 55 (26.2 bits)
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