GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000510-TA|BGIBMGA000510-PA|IPR001660|Sterile alpha motif
SAM, IPR010993|Sterile alpha motif homology
         (133 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF078789-3|AAK68487.1|  295|Caenorhabditis elegans Hypothetical ...    28   2.6  
AF078789-2|AAK21516.1|  318|Caenorhabditis elegans Hypothetical ...    28   2.6  
Z68337-3|CAA92750.2|  712|Caenorhabditis elegans Hypothetical pr...    27   3.4  
AL117193-15|CAB54992.2|  114|Caenorhabditis elegans Hypothetical...    27   4.5  
AC006648-12|AAF39861.4|  418|Caenorhabditis elegans Btb and math...    27   4.5  

>AF078789-3|AAK68487.1|  295|Caenorhabditis elegans Hypothetical
           protein Y44E3B.1b protein.
          Length = 295

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 13/38 (34%), Positives = 21/38 (55%)

Query: 96  KPEHLVMALSMKLGPALKIVACIDSLRPESEQNLHDHD 133
           KPE +  + +M    A+K  +C D  + E E +L D+D
Sbjct: 149 KPETMKTSKTMTTRRAIKRPSCYDDYQEEGETSLSDND 186


>AF078789-2|AAK21516.1|  318|Caenorhabditis elegans Hypothetical
           protein Y44E3B.1a protein.
          Length = 318

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 13/38 (34%), Positives = 21/38 (55%)

Query: 96  KPEHLVMALSMKLGPALKIVACIDSLRPESEQNLHDHD 133
           KPE +  + +M    A+K  +C D  + E E +L D+D
Sbjct: 149 KPETMKTSKTMTTRRAIKRPSCYDDYQEEGETSLSDND 186


>Z68337-3|CAA92750.2|  712|Caenorhabditis elegans Hypothetical
           protein M7.3 protein.
          Length = 712

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 17/55 (30%), Positives = 25/55 (45%)

Query: 74  GCAGYADEFLMQEVDGEALLLIKPEHLVMALSMKLGPALKIVACIDSLRPESEQN 128
           GC+ Y  +   QE+D  A LL+  ++L       +G   KI   I  LR  +  N
Sbjct: 654 GCSEYMTQLRDQEIDMHAFLLLDEQNLKDIGVSTIGARKKIHHAILKLRDSARLN 708


>AL117193-15|CAB54992.2|  114|Caenorhabditis elegans Hypothetical
          protein Y105C5A.13a protein.
          Length = 114

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 30 KAEASSNVEMADSQPT-SADSAQAKIPNANKWTVAEVCEFIRNIPGCAG 77
          +A++ SN ++A SQ      S+QA+  NAN    A++    R+ PG  G
Sbjct: 3  RAQSESNKKLAASQEARQPPSSQARHGNANSANQAKMPTTPRSQPGTVG 51


>AC006648-12|AAF39861.4|  418|Caenorhabditis elegans Btb and math
           domain containingprotein 19 protein.
          Length = 418

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 14/48 (29%), Positives = 25/48 (52%)

Query: 83  LMQEVDGEALLLIKPEHLVMALSMKLGPALKIVACIDSLRPESEQNLH 130
           L++ + GE+ +     H ++ L+ KL   L +  C+D L   SE  +H
Sbjct: 291 LLEVIYGESDVEDHTAHAILYLAHKLEMKLIVQKCVDFLLQISESTIH 338


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.314    0.129    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,758,155
Number of Sequences: 27539
Number of extensions: 87297
Number of successful extensions: 149
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 145
Number of HSP's gapped (non-prelim): 5
length of query: 133
length of database: 12,573,161
effective HSP length: 74
effective length of query: 59
effective length of database: 10,535,275
effective search space: 621581225
effective search space used: 621581225
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 55 (26.2 bits)