GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000510-TA|BGIBMGA000510-PA|IPR001660|Sterile alpha motif
SAM, IPR010993|Sterile alpha motif homology
         (133 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g45700.1 68415.m05682 sterile alpha motif (SAM) domain-contai...    36   0.012
At2g28450.1 68415.m03456 zinc finger (CCCH-type) family protein ...    33   0.085
At3g04890.1 68416.m00531 expressed protein                             27   3.2  
At3g45555.1 68416.m04920 zinc finger (C3HC4-type RING finger) fa...    26   7.4  
At5g42770.1 68418.m05209 Maf family protein contains Pfam domain...    26   9.7  
At4g04920.1 68417.m00715 expressed protein                             26   9.7  
At3g59410.1 68416.m06626 protein kinase family protein low simil...    26   9.7  

>At2g45700.1 68415.m05682 sterile alpha motif (SAM)
           domain-containing protein similar to SNM1 protein [Mus
           musculus] GI:7595835; contains Pfam profile PF00536: SAM
           domain (Sterile alpha motif)
          Length = 723

 Score = 35.5 bits (78), Expect = 0.012
 Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 62  VAEVCEFIRNIPGCAGYADEFLMQEVDGEALLLIKPEHLVMALSMKLGPALKIVACIDSL 121
           ++ V +++R++ G A Y D F+ +E+D + L  +  E L+      LGP  KIV  +  +
Sbjct: 241 LSPVLKWLRSL-GLAKYEDVFIREEIDWDTLQSLTEEDLLSIGITSLGPRKKIVNALSGV 299

Query: 122 R 122
           R
Sbjct: 300 R 300


>At2g28450.1 68415.m03456 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 809

 Score = 32.7 bits (71), Expect = 0.085
 Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 3/72 (4%)

Query: 28  NVKAEASSNVEMADSQPTSADSAQAKIPNANKWTVAEVCEFIRNIPGCAGYADEFLMQEV 87
           N++A         + + T+ +S+  KI   + W    +C + R    C+ + +E   +  
Sbjct: 47  NIEAVGEKRKRADEDEKTNLESSDTKITTPSPWWKTSLCSYFRREASCS-HGNE--CKYA 103

Query: 88  DGEALLLIKPEH 99
            GEA L +KP++
Sbjct: 104 HGEAELRMKPDN 115


>At3g04890.1 68416.m00531 expressed protein
          Length = 216

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 29 VKAEASSNVEMADSQPTS-ADSAQAKIPNANKWTVAEVCEFIRNIPG 74
          +   +SS     +  P   + S + K P   KW V+ V EF+R I G
Sbjct: 8  ISISSSSTFRRVNQWPRCFSGSPEKKTPAVLKWAVSGVTEFLRLISG 54


>At3g45555.1 68416.m04920 zinc finger (C3HC4-type RING finger)
           family protein low similarity to UbcM4-interacting
           protein 4 [Mus musculus] GI:13991706; contains Pfam
           profiles PF00097: Zinc finger C3HC4 type (RING finger),
           PF01485: IBR (In Between Ring fingers) domain
          Length = 213

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 1/41 (2%)

Query: 36  NVEMADSQPTSADSAQAKIPNANKWTVAEVCE-FIRNIPGC 75
           N +   + PTS D     + N  KW   E C+  I+   GC
Sbjct: 153 NCKKLGNNPTSDDKMLKVLANEKKWRQCEKCQHMIKLSEGC 193


>At5g42770.1 68418.m05209 Maf family protein contains Pfam domain
           PF02545: Maf-like protein
          Length = 233

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 4/51 (7%)

Query: 77  GYADEFLMQEVDGEALLLIKPEHLVMALSMKLGPA----LKIVACIDSLRP 123
           GY    +  ++D +++   KPE LV+AL+     A    L+I  C D  +P
Sbjct: 27  GYQFTLMSADIDEKSIRKEKPEELVLALAEAKADAIVSKLQISECEDEEQP 77


>At4g04920.1 68417.m00715 expressed protein 
          Length = 1250

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 3/46 (6%)

Query: 33  ASSNVEMADSQPTSADSAQAKIPNAN---KWTVAEVCEFIRNIPGC 75
           +SSN+E+    P +    + K PN+N   K +V E+C     +  C
Sbjct: 73  SSSNMEIDPVSPATVFCVKLKQPNSNLLHKMSVPELCRNFSAVAWC 118


>At3g59410.1 68416.m06626 protein kinase family protein low similarity
            to GCN2 eIF2alpha kinase [Mus musculus] GI:6066585;
            contains Pfam profiles PF03129: Anticodon binding domain,
            PF00069: Protein kinase domain
          Length = 1241

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 2/39 (5%)

Query: 41   DSQPTSADSAQAKIPNANKWTVAEVC--EFIRNIPGCAG 77
            +S  TS D     +     W V EVC  E   N+PG  G
Sbjct: 1070 NSSGTSNDGVLLAVGGRYDWLVQEVCDREHKMNLPGAVG 1108


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.314    0.129    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,664,630
Number of Sequences: 28952
Number of extensions: 83271
Number of successful extensions: 133
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 130
Number of HSP's gapped (non-prelim): 7
length of query: 133
length of database: 12,070,560
effective HSP length: 74
effective length of query: 59
effective length of database: 9,928,112
effective search space: 585758608
effective search space used: 585758608
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 54 (25.8 bits)