Silkworm BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000509-TA|BGIBMGA000509-PA|undefined
         (888 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81079-3|CAB03083.2|  588|Caenorhabditis elegans Hypothetical pr...    37   0.055
Z68108-15|CAJ58502.1|  582|Caenorhabditis elegans Hypothetical p...    36   0.13 
Z68108-5|CAD44152.2|  725|Caenorhabditis elegans Hypothetical pr...    36   0.13 
AY390537-1|AAQ94949.1|  692|Caenorhabditis elegans SMA-9 class B...    36   0.13 
AF026208-2|AAB71269.3|  774|Caenorhabditis elegans Prion-like-(q...    35   0.22 
Z48241-4|CAA88284.1|  468|Caenorhabditis elegans Hypothetical pr...    33   1.2  
Z48241-3|CAC42265.1|  490|Caenorhabditis elegans Hypothetical pr...    33   1.2  
AF241847-1|AAF71523.1|  468|Caenorhabditis elegans LAG-3B protein.     33   1.2  
AF241846-1|AAF71522.1|  490|Caenorhabditis elegans LAG-3A protein.     33   1.2  
AF025460-2|AAF02169.3|  545|Caenorhabditis elegans Prion-like-(q...    33   1.2  
U97194-8|AAB52447.3| 1254|Caenorhabditis elegans Prion-like-(q/n...    32   1.6  
AL132860-3|CAB60514.2|  342|Caenorhabditis elegans Hypothetical ...    31   2.7  
Z93384-1|CAB07633.3|  342|Caenorhabditis elegans Hypothetical pr...    31   4.7  
U23139-1|AAK31493.2|  513|Caenorhabditis elegans Hypothetical pr...    31   4.7  
U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interactin...    30   6.3  
U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon gu...    30   8.3  
AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.      30   8.3  
AJ345015-1|CAC87812.1|  577|Caenorhabditis elegans FEH-1 protein...    30   8.3  
AC025723-11|AAN84832.2|  554|Caenorhabditis elegans Mammalian fe...    30   8.3  
AC025723-9|AAN84831.1|  640|Caenorhabditis elegans Mammalian fe6...    30   8.3  

>Z81079-3|CAB03083.2|  588|Caenorhabditis elegans Hypothetical
           protein F39H11.3 protein.
          Length = 588

 Score = 37.1 bits (82), Expect = 0.055
 Identities = 46/166 (27%), Positives = 59/166 (35%), Gaps = 14/166 (8%)

Query: 49  KPGMSGEIKPQQIVEGQPQVVQHQLSMAQHEPSQQHHQTVTVVSSMPSNMASHXXXXXXX 108
           +P M G        +G P    HQ+   Q  P Q H Q   +   M   M          
Sbjct: 418 QPPMGGAHPGVVAPDGHP----HQMMQQQQHPQQHHMQYQGMHDPMQGGMDEGPQAKMMR 473

Query: 109 XXXXXXXSNAGITTMPPLQSLPSNAQHPQQLSAEWGHSRVQVIQQPLPNNAYLQQLYNTQ 168
                    A    MPP    P +  HPQQ     G   VQ++QQP P+  Y Q+     
Sbjct: 474 MGNVPVGRYA---PMPPPYGAPQD-YHPQQ-----GPPMVQMMQQPGPSGYYPQRPGQPT 524

Query: 169 GPLLMPGNIALHPGINSQQIQVIAAGKPFQGNQLGPHMLTTQ-GKQ 213
           G +  PG           Q+ + A G P QG   G  M   Q G+Q
Sbjct: 525 GAVPGPGPQGYMNPQMGMQMGMRAPGVPPQGYMPGRGMAPPQMGQQ 570


>Z68108-15|CAJ58502.1|  582|Caenorhabditis elegans Hypothetical
           protein T05A10.1k protein.
          Length = 582

 Score = 35.9 bits (79), Expect = 0.13
 Identities = 34/117 (29%), Positives = 49/117 (41%), Gaps = 11/117 (9%)

Query: 124 PPLQSLPSNAQHPQQLSAEWGHSRVQVIQQPLPNNAYLQQLYNTQGPLLMPGNIALHPGI 183
           PP Q  P+    PQ +SAE  H   QV ++ L +   LQ    T G    PG+++     
Sbjct: 13  PPGQQ-PAQMMMPQNISAETYHRLNQVQREQLNHQRLLQAQLQTNG----PGSVSQQQQA 67

Query: 184 NSQQIQVIAAGKPFQGNQLGPHMLTTQGKQVLQGQAAPFPGYTTIPAIPTTQNQTFV 240
           + QQ QV    +  Q  Q    + + Q +  LQ  A        + A+ T Q Q  V
Sbjct: 68  SQQQQQVQHVQQQQQSQQQQQQVASQQNQPQLQMNA------QILQALSTPQGQNLV 118


>Z68108-5|CAD44152.2|  725|Caenorhabditis elegans Hypothetical
           protein T05A10.1b protein.
          Length = 725

 Score = 35.9 bits (79), Expect = 0.13
 Identities = 34/117 (29%), Positives = 49/117 (41%), Gaps = 11/117 (9%)

Query: 124 PPLQSLPSNAQHPQQLSAEWGHSRVQVIQQPLPNNAYLQQLYNTQGPLLMPGNIALHPGI 183
           PP Q  P+    PQ +SAE  H   QV ++ L +   LQ    T G    PG+++     
Sbjct: 13  PPGQQ-PAQMMMPQNISAETYHRLNQVQREQLNHQRLLQAQLQTNG----PGSVSQQQQA 67

Query: 184 NSQQIQVIAAGKPFQGNQLGPHMLTTQGKQVLQGQAAPFPGYTTIPAIPTTQNQTFV 240
           + QQ QV    +  Q  Q    + + Q +  LQ  A        + A+ T Q Q  V
Sbjct: 68  SQQQQQVQHVQQQQQSQQQQQQVASQQNQPQLQMNA------QILQALSTPQGQNLV 118


>AY390537-1|AAQ94949.1|  692|Caenorhabditis elegans SMA-9 class B
           protein.
          Length = 692

 Score = 35.9 bits (79), Expect = 0.13
 Identities = 34/117 (29%), Positives = 49/117 (41%), Gaps = 11/117 (9%)

Query: 124 PPLQSLPSNAQHPQQLSAEWGHSRVQVIQQPLPNNAYLQQLYNTQGPLLMPGNIALHPGI 183
           PP Q  P+    PQ +SAE  H   QV ++ L +   LQ    T G    PG+++     
Sbjct: 13  PPGQQ-PAQMMMPQNISAETYHRLNQVQREQLNHQRLLQAQLQTNG----PGSVSQQQQA 67

Query: 184 NSQQIQVIAAGKPFQGNQLGPHMLTTQGKQVLQGQAAPFPGYTTIPAIPTTQNQTFV 240
           + QQ QV    +  Q  Q    + + Q +  LQ  A        + A+ T Q Q  V
Sbjct: 68  SQQQQQVQHVQQQQQSQQQQQQVASQQNQPQLQMNA------QILQALSTPQGQNLV 118


>AF026208-2|AAB71269.3|  774|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 40
           protein.
          Length = 774

 Score = 35.1 bits (77), Expect = 0.22
 Identities = 34/104 (32%), Positives = 45/104 (43%), Gaps = 14/104 (13%)

Query: 123 MPPLQSLPSNAQHPQQLSAE-WGHSRVQVIQQPLPNNAYLQQLYNTQG-PLLMPGNI-AL 179
           +PP    P   Q PQ    + +G+S    +QQP P     QQ YN Q      P  +  +
Sbjct: 477 LPPYHQ-PQQTQQPQGYQQQQYGYSTPFPVQQPQPQQPQQQQFYNQQQYNAQTPQQVQQV 535

Query: 180 HPGINSQQIQVIAAGKPFQGNQLGPHMLTTQGKQVLQGQAAPFP 223
           H     QQ+Q     +P Q NQ  PH+ + Q    L  Q AP P
Sbjct: 536 HQQTPQQQVQ-----QPHQPNQ-QPHIPSQQ----LPRQQAPQP 569



 Score = 30.7 bits (66), Expect = 4.7
 Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 3/80 (3%)

Query: 18  QQFNVPGIGEINLSFLASPQSNVNLLYDKNHKPGMSGEIKPQQIVEGQPQVVQHQLSMAQ 77
           QQ+N     ++      +PQ  V   +  N +P +  +  P+Q     PQ  Q++ S AQ
Sbjct: 522 QQYNAQTPQQVQQVHQQTPQQQVQQPHQPNQQPHIPSQQLPRQ---QAPQPAQNRPSAAQ 578

Query: 78  HEPSQQHHQTVTVVSSMPSN 97
               QQ     T     P+N
Sbjct: 579 QVVFQQGSVQATTAPQRPAN 598


>Z48241-4|CAA88284.1|  468|Caenorhabditis elegans Hypothetical
           protein C32A3.1b protein.
          Length = 468

 Score = 32.7 bits (71), Expect = 1.2
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 59  QQIVEGQPQVVQHQLSMAQHEPSQQHHQT-VTVVSSMPSNMASH 101
           +QI   Q Q  QHQ +  QH+   QHHQ    + +  P  M  H
Sbjct: 406 EQIRHQQQQAQQHQQAQQQHQQQAQHHQMGYGIPNGYPQQMHMH 449


>Z48241-3|CAC42265.1|  490|Caenorhabditis elegans Hypothetical
           protein C32A3.1a protein.
          Length = 490

 Score = 32.7 bits (71), Expect = 1.2
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 59  QQIVEGQPQVVQHQLSMAQHEPSQQHHQT-VTVVSSMPSNMASH 101
           +QI   Q Q  QHQ +  QH+   QHHQ    + +  P  M  H
Sbjct: 428 EQIRHQQQQAQQHQQAQQQHQQQAQHHQMGYGIPNGYPQQMHMH 471


>AF241847-1|AAF71523.1|  468|Caenorhabditis elegans LAG-3B protein.
          Length = 468

 Score = 32.7 bits (71), Expect = 1.2
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 59  QQIVEGQPQVVQHQLSMAQHEPSQQHHQT-VTVVSSMPSNMASH 101
           +QI   Q Q  QHQ +  QH+   QHHQ    + +  P  M  H
Sbjct: 406 EQIRHQQQQAQQHQQAQQQHQQQAQHHQMGYGIPNGYPQQMHMH 449


>AF241846-1|AAF71522.1|  490|Caenorhabditis elegans LAG-3A protein.
          Length = 490

 Score = 32.7 bits (71), Expect = 1.2
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 59  QQIVEGQPQVVQHQLSMAQHEPSQQHHQT-VTVVSSMPSNMASH 101
           +QI   Q Q  QHQ +  QH+   QHHQ    + +  P  M  H
Sbjct: 428 EQIRHQQQQAQQHQQAQQQHQQQAQHHQMGYGIPNGYPQQMHMH 471


>AF025460-2|AAF02169.3|  545|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 41
           protein.
          Length = 545

 Score = 32.7 bits (71), Expect = 1.2
 Identities = 51/220 (23%), Positives = 76/220 (34%), Gaps = 15/220 (6%)

Query: 58  PQQIVEGQPQVVQHQLSMAQHEPSQQHHQTVTVVSSMPSNMASHXXXXXXXXXXXXXXSN 117
           P    + QP  V  Q S  Q +  Q   Q    +++  +  +                  
Sbjct: 142 PSAATQQQPVSVTSQASQQQQQFQQIQQQRAAAIAAAAAATSQQAPPAQASQATSAAQQI 201

Query: 118 AGITTMPPLQSLPSNAQHPQQL----SAEWGHSRVQVIQQPLPNNAYLQQLYNTQGPLLM 173
           A    + P Q      QH QQ       +    R Q  QQ L      QQL      LL 
Sbjct: 202 ATSMGLQPAQVTDLVNQHAQQYLLLQQQQQQQQREQQQQQQLQAQQVQQQLI---AHLLG 258

Query: 174 PGNIALH--PGIN-----SQQIQVIAAGKPFQGNQLGPHMLTTQGKQVLQGQAAPFPGYT 226
            G+ A    P ++      QQ+   AA +     QL   M+ T  +Q ++  AA     +
Sbjct: 259 GGHQAQQAAPAVSVAQQQQQQVAAAAAAQQQHNAQLQNIMILTALQQQMERGAAAGAAAS 318

Query: 227 TIPAIPTTQNQTFVFSSNILPAHSQPTVSGITQQQKQSDM 266
               +   Q Q    +    P  SQP+ +   QQQ+Q D+
Sbjct: 319 LPYQLQLAQAQAQAQAQQAPPT-SQPSQAATPQQQQQLDL 357


>U97194-8|AAB52447.3| 1254|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 20
           protein.
          Length = 1254

 Score = 32.3 bits (70), Expect = 1.6
 Identities = 42/146 (28%), Positives = 54/146 (36%), Gaps = 14/146 (9%)

Query: 124 PPLQSL-PSNAQHPQQLSAEWGHSRVQVIQQP--LPNNAYLQQLYNTQGPLLMPGNIALH 180
           PP QS  P   Q  QQ  A       Q +QQP     +A  +     + P       A  
Sbjct: 618 PPQQSQQPIPPQQQQQPPAP-----PQQLQQPPVQDTSAVAEPPKKKKRPTKKQKEAAAA 672

Query: 181 PGINSQQIQVIAAGKPFQGNQLGPH-MLTTQGKQVLQGQAAPFPGYTT--IPAIPTTQNQ 237
             +  QQ Q     + + G Q      +    +Q  QGQ    PGY     P +P  Q  
Sbjct: 673 AALEQQQQQQQQQMQAYYGQQQQQQERMQMMQQQQQQGQMVQQPGYPGQGYPGMPPPQG- 731

Query: 238 TFVFSSNILPAHSQPTVSGITQQQKQ 263
              F    LP  +QPT   I QQQ+Q
Sbjct: 732 --AFPPGYLPGGAQPTQQQIWQQQQQ 755


>AL132860-3|CAB60514.2|  342|Caenorhabditis elegans Hypothetical
           protein Y56A3A.4 protein.
          Length = 342

 Score = 31.5 bits (68), Expect = 2.7
 Identities = 27/90 (30%), Positives = 35/90 (38%), Gaps = 5/90 (5%)

Query: 180 HPGINSQQIQVIAAGKPFQGNQLGPHMLTTQGKQVLQGQAAPFPGYTTIPAIPTTQNQTF 239
           H   N QQ Q    G+P  G   GP  +    +Q+ Q    P P     P  P  Q Q  
Sbjct: 43  HQNPNEQQQQQQFVGQPPMGGMGGPMRMQMPQQQIRQ-MPYPSPQMRAGPPPPQQQQQQH 101

Query: 240 VFSSNILPAHSQP---TVSGITQQQKQSDM 266
            F    +P   QP   T +G + Q +Q  M
Sbjct: 102 -FQQMGIPQQQQPQQFTPNGQSMQMQQRPM 130


>Z93384-1|CAB07633.3|  342|Caenorhabditis elegans Hypothetical
           protein H08M01.1 protein.
          Length = 342

 Score = 30.7 bits (66), Expect = 4.7
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 126 LQSLPSNAQHPQQLSAEWGHSRVQVIQQP-LPNNAYLQQLYNTQGPLLMPGNIA 178
           +Q+LP  AQ P+ L AE  +++V V  +P  P  +   +     GP+  P N+A
Sbjct: 52  VQALPIPAQSPEHLVAEHSNAQVPVDARPNPPTQSPAPRAAPDHGPVQAPRNLA 105


>U23139-1|AAK31493.2|  513|Caenorhabditis elegans Hypothetical
           protein F13H8.5 protein.
          Length = 513

 Score = 30.7 bits (66), Expect = 4.7
 Identities = 18/65 (27%), Positives = 27/65 (41%)

Query: 18  QQFNVPGIGEINLSFLASPQSNVNLLYDKNHKPGMSGEIKPQQIVEGQPQVVQHQLSMAQ 77
           QQF  P   +    F    Q+    L  + ++P    + +PQQ    QPQ  Q  +   Q
Sbjct: 42  QQFQQPQQFQQQPQFQQQQQNYQQFLAQQQYQPQFQAQQQPQQPQYFQPQQQQQPVQYQQ 101

Query: 78  HEPSQ 82
            +P Q
Sbjct: 102 QQPQQ 106


>U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interacting
           protein protein16, isoform d protein.
          Length = 1030

 Score = 30.3 bits (65), Expect = 6.3
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 5/46 (10%)

Query: 43  LYDKNHKPGMSGEIKPQQIVEGQPQVVQHQ---LSMAQHEPSQQHH 85
           LY+++H  GM+  +   + +  QPQV  H        QH+P QQ++
Sbjct: 439 LYERSH--GMTSPVPIMESISPQPQVSHHHHQPQQHQQHQPQQQYY 482


>U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon
           guidance protein 2,isoform a protein.
          Length = 2886

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 22/88 (25%), Positives = 31/88 (35%), Gaps = 2/88 (2%)

Query: 366 PDAPPSMFIQHSPQNTVHHNSVSVACA-TPTTAKPRASADGISKAPRPLSNILPSGGIRP 424
           P +PPS    H   N+ H   +SV+   T T+A    S       P P    LP      
Sbjct: 698 PTSPPSCHSSHVTSNSTHSTHISVSFPNTVTSASSILSNSSSPHQPTPSLCSLPESS-SL 756

Query: 425 NSNVSTQTXXXXXXXXXKQRGKPGVRSP 452
           +S  +  T           +G P   +P
Sbjct: 757 HSIPTAMTSLSTTTTPTHSQGAPSTSTP 784


>AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.
          Length = 2914

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 22/88 (25%), Positives = 31/88 (35%), Gaps = 2/88 (2%)

Query: 366 PDAPPSMFIQHSPQNTVHHNSVSVACA-TPTTAKPRASADGISKAPRPLSNILPSGGIRP 424
           P +PPS    H   N+ H   +SV+   T T+A    S       P P    LP      
Sbjct: 698 PTSPPSCHSSHVTSNSTHSTHISVSFPNTVTSASSILSNSSSPHQPTPSLCSLPESS-SL 756

Query: 425 NSNVSTQTXXXXXXXXXKQRGKPGVRSP 452
           +S  +  T           +G P   +P
Sbjct: 757 HSIPTAMTSLSTTTTPTHSQGAPSTSTP 784


>AJ345015-1|CAC87812.1|  577|Caenorhabditis elegans FEH-1 protein
           protein.
          Length = 577

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 20/53 (37%), Positives = 23/53 (43%), Gaps = 4/53 (7%)

Query: 356 PNPIFIRGTQPDAPPSMFIQHSPQNTVHHNSVSVACATPTTAKPRASADGISK 408
           P P   R TQ DAPP   IQ  PQ  V    +       TT K R   D +S+
Sbjct: 175 PPPPVNRETQADAPPPQIIQLPPQQPV----IEEHAFKQTTTKRRIEQDEMSE 223


>AC025723-11|AAN84832.2|  554|Caenorhabditis elegans Mammalian fe65
           homolog protein1, isoform c protein.
          Length = 554

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 20/53 (37%), Positives = 23/53 (43%), Gaps = 4/53 (7%)

Query: 356 PNPIFIRGTQPDAPPSMFIQHSPQNTVHHNSVSVACATPTTAKPRASADGISK 408
           P P   R TQ DAPP   IQ  PQ  V    +       TT K R   D +S+
Sbjct: 152 PPPPVNRETQADAPPPQIIQLPPQQPV----IEEHAFKQTTTKRRIEQDEMSE 200


>AC025723-9|AAN84831.1|  640|Caenorhabditis elegans Mammalian fe65
           homolog protein1, isoform b protein.
          Length = 640

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 20/53 (37%), Positives = 23/53 (43%), Gaps = 4/53 (7%)

Query: 356 PNPIFIRGTQPDAPPSMFIQHSPQNTVHHNSVSVACATPTTAKPRASADGISK 408
           P P   R TQ DAPP   IQ  PQ  V    +       TT K R   D +S+
Sbjct: 263 PPPPVNRETQADAPPPQIIQLPPQQPV----IEEHAFKQTTTKRRIEQDEMSE 311


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.314    0.128    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,374,799
Number of Sequences: 27539
Number of extensions: 621289
Number of successful extensions: 1414
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1389
Number of HSP's gapped (non-prelim): 40
length of query: 888
length of database: 12,573,161
effective HSP length: 88
effective length of query: 800
effective length of database: 10,149,729
effective search space: 8119783200
effective search space used: 8119783200
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 64 (29.9 bits)