Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000509-TA|BGIBMGA000509-PA|undefined
         (888 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    27   0.88 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   4.7  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 26.6 bits (56), Expect = 0.88
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 3/33 (9%)

Query: 53  SGEIKPQQIVEGQPQVVQHQLSMAQHEPSQQHH 85
           S  ++PQ +V G PQ  Q QL+ A+ +  QQH+
Sbjct: 100 SAALQPQHVVYGNPQ--QQQLA-AETQQQQQHN 129


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 11/28 (39%), Positives = 14/28 (50%)

Query: 59   QQIVEGQPQVVQHQLSMAQHEPSQQHHQ 86
            QQ  + QPQ  Q Q    Q +P QQ  +
Sbjct: 1522 QQPQQQQPQPQQQQQQQQQQQPQQQQKE 1549



 Score = 23.8 bits (49), Expect = 6.2
 Identities = 12/48 (25%), Positives = 20/48 (41%)

Query: 221  PFPGYTTIPAIPTTQNQTFVFSSNILPAHSQPTVSGITQQQKQSDMHK 268
            P P     P +PT   + +  +S I     Q   + + QQQ+Q    +
Sbjct: 1171 PSPFMAGAPNVPTILPEQYFATSRIRGLQEQQRNAAMVQQQQQQQQQQ 1218


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.128    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,185
Number of Sequences: 429
Number of extensions: 7100
Number of successful extensions: 11
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 5
length of query: 888
length of database: 140,377
effective HSP length: 64
effective length of query: 824
effective length of database: 112,921
effective search space: 93046904
effective search space used: 93046904
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 48 (23.4 bits)