GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000509-TA|BGIBMGA000509-PA|undefined
         (888 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    34   0.100
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    29   2.8  
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma...    28   5.0  
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    28   5.0  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    28   5.0  
SPCPJ732.01 |vps5||retromer complex subunit Vps5|Schizosaccharom...    28   6.6  

>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 33.9 bits (74), Expect = 0.100
 Identities = 34/108 (31%), Positives = 44/108 (40%), Gaps = 8/108 (7%)

Query: 127 QSLPSNAQHPQQLSAEWGHSRVQVIQQP--LPNNAYLQQLYNTQGPLLMPGNIALHPGIN 184
           QS P+ + +P  L   W     Q   QP  L  +     +  T  PL  P      PG+ 
Sbjct: 448 QSAPALSMNPSSLPP-WQQPTQQSAVQPSNLVPSQNAPFIPGTSAPL--PPTTFAPPGVP 504

Query: 185 SQQIQVIAAGKPFQGNQLGPHMLTTQGKQVLQGQAAPFPGYTTIPAIP 232
              I   A G P   N   P M+   G  +  G  APFPGY  +PA+P
Sbjct: 505 LPPIPG-APGMP-NLNMSQPPMVPP-GMALPPGMPAPFPGYPAVPAMP 549


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 42/150 (28%), Positives = 56/150 (37%), Gaps = 13/150 (8%)

Query: 126 LQSLPSNAQHPQQLSAEWGHSRVQVIQQPLPNNAYLQQLYNTQGPLLMPGNIALHPGINS 185
           L  L S  Q P Q S   G ++ Q IQQP P+ +   Q +  +   ++P    L P    
Sbjct: 62  LHPLLSQQQQPAQQSPSLGPAQ-QNIQQP-PSVSIASQPHYAEA--IVPIQQVLQPQQYR 117

Query: 186 Q--QIQVIAAGKPFQGNQLGPHMLTTQGKQVLQGQAAPFPGYTTIPAIPTTQNQTFV--- 240
           Q     V A   P Q  QL   M      Q +Q    P      IP +P  Q Q      
Sbjct: 118 QLPPNMVAATNAPQQHPQLQRMMPILSSNQPIQQLPLPNQASPYIP-VPLQQQQQSQPQQ 176

Query: 241 ---FSSNILPAHSQPTVSGITQQQKQSDMH 267
                 +  P   QP    + QQQ+Q  +H
Sbjct: 177 QPQQQQHQQPQQPQPPQQPLQQQQQQRQLH 206


>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 358

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/82 (20%), Positives = 37/82 (45%)

Query: 346 GTLPAGGLLTPNPIFIRGTQPDAPPSMFIQHSPQNTVHHNSVSVACATPTTAKPRASADG 405
           G +P    + P       T  + P +     S  + + ++++S + +TP TA    S+  
Sbjct: 50  GPVPGTTTIYPTSNVASNTSENYPYTGSKSLSSSSILSNSTISTSSSTPITASVPTSSSI 109

Query: 406 ISKAPRPLSNILPSGGIRPNSN 427
           +S +  P ++ +P+    P S+
Sbjct: 110 LSNSTIPTTSPVPTTSSTPTSS 131


>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 3/73 (4%)

Query: 78  HEPSQQHHQTVTVVSSMPSNMASHXXXXXXXXXXXXXXSNAGITTMPPLQSLPSNAQHPQ 137
           + P  Q H  V  + S+PSN+                 ++   T MP L++  SNAQ+  
Sbjct: 35  YPPVAQGHYPVNNMWSLPSNVR---VISSHGAPGHQTSASQPSTVMPALETNASNAQYYP 91

Query: 138 QLSAEWGHSRVQV 150
             S   G++ VQV
Sbjct: 92  AYSVINGNNSVQV 104


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/95 (17%), Positives = 37/95 (38%), Gaps = 1/95 (1%)

Query: 610 LVGNGLVQTSV-GMAVQQQTTLSHATPMQAGAVGLIAAPVQGSVMPMQTSTAMVAHVKTE 668
           L GNG++QT+V   +V   T+ S ++   + +     +P   S     +S++  +   + 
Sbjct: 117 LTGNGVLQTTVSSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSS 176

Query: 669 DDKSXXXXXXXXXXXXXXXXXMVAESTTDAAVSAT 703
              S                   + S++ ++V  T
Sbjct: 177 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPIT 211


>SPCPJ732.01 |vps5||retromer complex subunit
           Vps5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/32 (37%), Positives = 20/32 (62%)

Query: 234 TQNQTFVFSSNILPAHSQPTVSGITQQQKQSD 265
           T++ T    S  L  H+QP+VS +T Q++ +D
Sbjct: 216 TKSHTVYSVSTRLEEHNQPSVSNVTVQRRYND 247


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.128    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,925,764
Number of Sequences: 5004
Number of extensions: 103612
Number of successful extensions: 182
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 178
Number of HSP's gapped (non-prelim): 8
length of query: 888
length of database: 2,362,478
effective HSP length: 79
effective length of query: 809
effective length of database: 1,967,162
effective search space: 1591434058
effective search space used: 1591434058
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 58 (27.5 bits)