Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000509-TA|BGIBMGA000509-PA|undefined
(888 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0097 + 25796725-25796857,25797366-25797495,25798273-257988... 35 0.25
12_01_0847 + 7934921-7935255,7935789-7935804 33 0.76
04_04_0779 - 28023735-28024058,28024520-28024618,28024704-280249... 32 1.8
12_01_0298 - 2250517-2251235,2251331-2251577,2251615-2252951,225... 32 2.3
02_05_1337 - 35780076-35780290,35780377-35780408,35780490-357805... 31 3.1
07_03_0332 + 16880184-16881017,16881334-16881462,16882685-168827... 31 4.0
02_05_0237 + 27095817-27097433 31 4.0
11_02_0133 + 8661030-8661141,8661727-8662031,8662158-8662331,866... 30 9.3
08_02_0473 + 17586507-17587004,17587146-17588145,17588314-175885... 30 9.3
08_01_0941 - 9301603-9301788,9301866-9301958,9302060-9302120,930... 30 9.3
05_07_0257 + 28719980-28720220,28721412-28721455,28722521-287225... 30 9.3
05_04_0060 + 17576427-17578781 30 9.3
03_05_0791 + 27736978-27737217,27737648-27739191,27739512-277397... 30 9.3
02_03_0365 - 18198669-18198809,18198887-18198979,18199078-181991... 30 9.3
02_02_0011 + 6083431-6085541,6086659-6086779,6087188-6087247,608... 30 9.3
02_01_0297 + 1986422-1986570,1986960-1987065,1987188-1987464,198... 30 9.3
>02_05_0097 +
25796725-25796857,25797366-25797495,25798273-25798842,
25799604-25799650,25799908-25799976,25801437-25801699
Length = 403
Score = 35.1 bits (77), Expect = 0.25
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 844 ILTHVIEGYVIQEAGEPFAVNRPLREWADKEDKENKLPSSDEPP 887
+ HV+E +EAG+ VN P W ++K N LP SD+ P
Sbjct: 304 VAVHVLED---REAGKEKGVNAPDSRWGQPDEKTNLLPRSDKRP 344
>12_01_0847 + 7934921-7935255,7935789-7935804
Length = 116
Score = 33.5 bits (73), Expect = 0.76
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 247 PAHSQPTVSGITQQQKQSDMHKCGGKVT 274
P H QP + T+ QKQ +H+C G VT
Sbjct: 45 PPHQQPKIRKCTEAQKQDILHECRGYVT 72
>04_04_0779 -
28023735-28024058,28024520-28024618,28024704-28024940,
28025227-28025334,28025427-28025486,28025813-28025888,
28025984-28026144,28026374-28026436,28026543-28026630,
28026872-28027612,28027695-28028239
Length = 833
Score = 32.3 bits (70), Expect = 1.8
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Query: 385 NSVSVACATPTTAKPRASADGISK-----APRPLSNILPSGGIRPNSNVSTQTXXXXXXX 439
+SV +C + T ++P + + +S+ A RP ++ LP G+RP T +
Sbjct: 50 SSVEKSCRSTTVSRPTSPSKEVSRCQSFSADRPHAHPLPIPGVRP-PVTRTVSDITESKP 108
Query: 440 XXKQRGKPGVRSPAP 454
++RGKP + P P
Sbjct: 109 ILEKRGKPPLLLPLP 123
>12_01_0298 -
2250517-2251235,2251331-2251577,2251615-2252951,
2256029-2256188
Length = 820
Score = 31.9 bits (69), Expect = 2.3
Identities = 31/87 (35%), Positives = 38/87 (43%), Gaps = 9/87 (10%)
Query: 330 QISGALPQVWAG--GLQ--AGTLPAGGLLTPNPIFIRGTQPDAPPSMFIQHSPQNTVHHN 385
Q+SG +P GL AG GL P P + AP S + SPQ+ V N
Sbjct: 275 QLSGRVPDAMRAKFGLASFAGNAGLCGLAPPLPACSFMPREPAPTSPSVPSSPQSVVPSN 334
Query: 386 ----SVSVACATPTTAKPRASADGISK 408
S SVA ++P A P S DG K
Sbjct: 335 PAASSSSVASSSPALATPE-SRDGPGK 360
>02_05_1337 -
35780076-35780290,35780377-35780408,35780490-35780584,
35780670-35780743,35780851-35780986,35781072-35781135,
35781333-35781395,35781514-35781656,35781752-35781889,
35781973-35782094,35782210-35782375,35782647-35782652,
35782988-35783059,35783241-35783348,35783719-35783848,
35783964-35784070,35784896-35785005,35785302-35785435,
35785528-35785982,35786068-35786595
Length = 965
Score = 31.5 bits (68), Expect = 3.1
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Query: 362 RGTQPDAPPSMFIQHSPQNT-VHHNSVSVACATPTTAKPRAS------ADGISKAPRPLS 414
RG P PP Q P++T +V+VA ++ TTA +S I +APRP
Sbjct: 51 RGASPPPPPQQQQQQQPRSTPTRATTVTVASSSSTTATASSSPLAPELRQAIMEAPRPSE 110
Query: 415 NILPS 419
PS
Sbjct: 111 LAQPS 115
>07_03_0332 +
16880184-16881017,16881334-16881462,16882685-16882750,
16883159-16883224,16884419-16884457,16884858-16885028
Length = 434
Score = 31.1 bits (67), Expect = 4.0
Identities = 16/45 (35%), Positives = 21/45 (46%)
Query: 377 SPQNTVHHNSVSVACATPTTAKPRASADGISKAPRPLSNILPSGG 421
+P N HH + AC P A A+A G + S+ L SGG
Sbjct: 120 APPNHGHHVGGAAACDNPAVAAAMAAAHGGGNVKQSGSSFLDSGG 164
>02_05_0237 + 27095817-27097433
Length = 538
Score = 31.1 bits (67), Expect = 4.0
Identities = 24/103 (23%), Positives = 37/103 (35%), Gaps = 3/103 (2%)
Query: 268 KCGGKVTXXXXXXXXXXXXQTVPVQAQCVQVSQPVLSXXXXXXXXIIGPLQTGGQTMQFA 327
+ GG VT T + A V + ++S G L T + F
Sbjct: 349 RIGGPVTTVLAIVGISLATITTNIAANVVAPANALVSMSPRKFTFAKGALVTALLGIAFQ 408
Query: 328 PWQI---SGALPQVWAGGLQAGTLPAGGLLTPNPIFIRGTQPD 367
PW++ S + W G A P GG++ + +R T D
Sbjct: 409 PWRLLSSSESFVYTWLLGYSALMGPIGGIILADHYIVRRTALD 451
>11_02_0133 +
8661030-8661141,8661727-8662031,8662158-8662331,
8662469-8662783,8662886-8663456,8663474-8663786,
8663870-8663968,8664202-8664315,8664403-8664463,
8664565-8664657,8664742-8664927
Length = 780
Score = 29.9 bits (64), Expect = 9.3
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 383 HHNSVSVACATPTTAKPRASADGISKAPRP 412
H N +S T T KP G+ K PRP
Sbjct: 339 HKNDISFELGTDATQKPMVPKPGLGKPPRP 368
>08_02_0473 +
17586507-17587004,17587146-17588145,17588314-17588566,
17588647-17588757,17588845-17588905,17588994-17589086,
17589164-17589349
Length = 733
Score = 29.9 bits (64), Expect = 9.3
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 383 HHNSVSVACATPTTAKPRASADGISKAPRP 412
H N +S T T KP G++K PRP
Sbjct: 267 HKNDISFGLGTDATRKPVVPKPGLAKPPRP 296
>08_01_0941 -
9301603-9301788,9301866-9301958,9302060-9302120,
9302397-9302648,9302903-9303720,9303993-9304490
Length = 635
Score = 29.9 bits (64), Expect = 9.3
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 383 HHNSVSVACATPTTAKPRASADGISKAPRP 412
H N +S T T KP G+ K PRP
Sbjct: 226 HKNDISFGLGTDATRKPLVPKPGLGKPPRP 255
>05_07_0257 +
28719980-28720220,28721412-28721455,28722521-28722590,
28722693-28722816,28723420-28724060,28725100-28725364,
28725434-28725713,28726042-28726209,28726867-28727358,
28727432-28727689
Length = 860
Score = 29.9 bits (64), Expect = 9.3
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 378 PQNTVHHNSVSVACATPTTAKPRASADGISKAPRPLSNILP 418
P NT+++N + ATP+ +P +SA + R L NI P
Sbjct: 510 PNNTMYNNLSTSDYATPSAVQPDSSAHIYLQEHRQLQNISP 550
>05_04_0060 + 17576427-17578781
Length = 784
Score = 29.9 bits (64), Expect = 9.3
Identities = 13/48 (27%), Positives = 22/48 (45%)
Query: 213 QVLQGQAAPFPGYTTIPAIPTTQNQTFVFSSNILPAHSQPTVSGITQQ 260
QV G A GY + + + N T VF+S ++ P V+ + +
Sbjct: 453 QVTAGDGAKIMGYAAVGSPAASHNATIVFNSTVVGVKPAPVVAAFSSR 500
>03_05_0791 +
27736978-27737217,27737648-27739191,27739512-27739763,
27739844-27739954,27740042-27740102,27740373-27740558
Length = 797
Score = 29.9 bits (64), Expect = 9.3
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 383 HHNSVSVACATPTTAKPRASADGISKAPRP 412
H N +S T T KP G+ K PRP
Sbjct: 410 HKNDISFGLGTDATQKPVVDKPGLGKPPRP 439
>02_03_0365 -
18198669-18198809,18198887-18198979,18199078-18199138,
18199291-18199336,18199417-18199682,18199766-18200744,
18201012-18201564,18201661-18201909,18201995-18202234
Length = 875
Score = 29.9 bits (64), Expect = 9.3
Identities = 13/30 (43%), Positives = 14/30 (46%)
Query: 383 HHNSVSVACATPTTAKPRASADGISKAPRP 412
H N VS T T KP G+ K PRP
Sbjct: 404 HKNDVSFGLGTDATEKPVVPKPGLGKPPRP 433
>02_02_0011 + 6083431-6085541,6086659-6086779,6087188-6087247,
6087354-6088391,6089733-6089925,6090326-6090375,
6090470-6090744,6091114-6091180,6091189-6091278,
6091301-6091381,6091435-6091593
Length = 1414
Score = 29.9 bits (64), Expect = 9.3
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 124 PPLQSLPSNAQHPQQLSAEWGHSRVQVIQQPLPNNAYLQQLYNTQGPL 171
P LQ L QH QQ + H + +Q +P+N+ Q TQ PL
Sbjct: 1003 PSLQQLHHPYQHQQQQQQQLYHHQ-NALQPQIPSNSIPQAYLRTQQPL 1049
>02_01_0297 +
1986422-1986570,1986960-1987065,1987188-1987464,
1987805-1988305,1989010-1990016,1990131-1990781,
1991337-1991633,1991735-1992013,1993070-1993198,
1993291-1993491,1993651-1993793,1993878-1994190,
1994349-1994488,1995320-1995398,1995484-1995753,
1996208-1996425,1996521-1996632
Length = 1623
Score = 29.9 bits (64), Expect = 9.3
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 6/93 (6%)
Query: 15 VHTQQFNVPGIG---EINLSFLASPQSNVNLLYDKNHKPGMSGEIKPQQI-VEGQPQVVQ 70
+HT Q N+ I +I L P+ H+ + + QQ ++ Q VQ
Sbjct: 386 LHTNQLNMQSIQPQPQIKTEVLDQPEKMNFQSSQLTHEQLIRQQHSMQQHQMQPSSQFVQ 445
Query: 71 HQLSMAQHEPSQQHHQTVTVVSSM--PSNMASH 101
+Q + Q +P+ QH Q++ +S+ P +SH
Sbjct: 446 NQYHLNQQQPNSQHQQSILRSNSLKQPQLSSSH 478
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.314 0.128 0.377
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,354,139
Number of Sequences: 37544
Number of extensions: 770406
Number of successful extensions: 1692
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1678
Number of HSP's gapped (non-prelim): 19
length of query: 888
length of database: 14,793,348
effective HSP length: 89
effective length of query: 799
effective length of database: 11,451,932
effective search space: 9150093668
effective search space used: 9150093668
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 64 (29.9 bits)
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