Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000509-TA|BGIBMGA000509-PA|undefined
(888 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16304| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 1.3
SB_7384| Best HMM Match : CXC (HMM E-Value=2.2e-05) 32 2.3
SB_34069| Best HMM Match : ARID (HMM E-Value=4.8e-14) 31 3.1
SB_33821| Best HMM Match : zf-MIZ (HMM E-Value=1.3e-29) 31 3.1
SB_50768| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 9.4
SB_49878| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 9.4
SB_47306| Best HMM Match : I-set (HMM E-Value=0) 30 9.4
>SB_16304| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1489
Score = 32.7 bits (71), Expect = 1.3
Identities = 36/104 (34%), Positives = 47/104 (45%), Gaps = 12/104 (11%)
Query: 125 PLQSLPSNAQHPQQLSAEWGHSRVQVIQQP-LPNNAYLQQLYNTQGPLLMPGNIALHPGI 183
P+Q L AQ QQL G +V +I+QP L +Q L Q + P + + +
Sbjct: 1037 PVQQL--TAQQIQQLQNSGGVQKVLIIKQPELLQKLGVQGLKPQQTIQITPQQLQVLQKL 1094
Query: 184 NSQQIQVIAAG----KPFQGNQLGPHMLTTQ---GKQVLQGQAA 220
+SQQ G KP G Q P +LT Q QVLQ Q A
Sbjct: 1095 HSQQQTTTQKGSILTKPMAGTQ--PKLLTAQQLKQLQVLQQQQA 1136
>SB_7384| Best HMM Match : CXC (HMM E-Value=2.2e-05)
Length = 422
Score = 31.9 bits (69), Expect = 2.3
Identities = 54/235 (22%), Positives = 83/235 (35%), Gaps = 13/235 (5%)
Query: 153 QPLPNNAYLQQLYNTQGPLLMPGNIALHPGINSQQIQVIAAGKPFQGNQL-GPHMLTTQG 211
QP A L Q Q PL + + G S Q+ V+ +G P + Q+ GP T G
Sbjct: 50 QPRQTCAILPQKTQAQTPLTPTKTVQIGVGHTSPQV-VMLSGSPIKLTQVRGPFKTTAAG 108
Query: 212 KQVLQGQAAPFPGYTTIPAIPTTQNQTFVFSSNILPAHSQPTVSGITQQQKQSDMHKCGG 271
Q+ G+ T +P + TFV ++ + P G+ + +
Sbjct: 109 GQIPIGKGVQQISNVTFVQVP---SNTFVQNAGV--RQGSPLKQGVVPRVIPISLAVNKS 163
Query: 272 KVTXXXXXXXXXXXXQTVPVQAQCVQVS-QPVLSXXXXXXXXIIGPL-QTGGQTMQFAPW 329
+ TV V+A +++ P LS PL Q G + Q
Sbjct: 164 QAVSSSHMTISMTTSGTVTVRAIAPKMNIAPTLSASQTIQLAPKPPLVQASGASQQGQQR 223
Query: 330 QISGAL-PQVWAGGLQ--AGTLPAGGLLTP-NPIFIRGTQPDAPPSMFIQHSPQN 380
I A+ P LQ G + G + P + G+ P A P +P N
Sbjct: 224 FIIPAIAPNTNTTNLQFPHGVISGGVVYLPQQALQSSGSFPIAVPLQANAFTPNN 278
>SB_34069| Best HMM Match : ARID (HMM E-Value=4.8e-14)
Length = 1774
Score = 31.5 bits (68), Expect = 3.1
Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 10/110 (9%)
Query: 349 PAGG--LLTPNPIFIRGT--QPDAPPSMFIQH----SPQNTVHHNSVSVACATPTTA--K 398
P GG LL P ++RG +P++ PS + + Q+T+ +N+ VA + +A K
Sbjct: 649 PRGGARLLLPYERYVRGQLHKPESSPSSPEDYPDPTNTQSTIENNNNEVASSVKGSAVVK 708
Query: 399 PRASADGISKAPRPLSNILPSGGIRPNSNVSTQTXXXXXXXXXKQRGKPG 448
P S +AP L P G+ + + S T K K G
Sbjct: 709 PMVSVKAEERAPTSLVTSRPGTGLDKSGHQSRATPPVTLSLAGKPTVKVG 758
>SB_33821| Best HMM Match : zf-MIZ (HMM E-Value=1.3e-29)
Length = 1202
Score = 31.5 bits (68), Expect = 3.1
Identities = 32/114 (28%), Positives = 43/114 (37%), Gaps = 7/114 (6%)
Query: 124 PPLQSLPSNAQHPQQLSAEWGH-SRVQVIQQPLPNNAYLQQLYNTQGPLLMPGNIALHPG 182
PP + Q P + +R Q +Q+ + A +QQ Y Q MP + +
Sbjct: 533 PPHSQMQQPNQPPNMMKGPRPQMTRNQYLQEYMMKRAQMQQHYKQQQQPYMPNQMP-NQM 591
Query: 183 INSQQIQVIAAGKPFQGNQLGPHMLTTQGKQVLQGQAAPFPGYTTIPAIPTTQN 236
N Q+ G P G Q+ P G Q Q P P YT PA QN
Sbjct: 592 PNQMPNQMPNQGGPQMGYQMQPAGYQQSG---YQQQPTPPPPYT--PAATMNQN 640
>SB_50768| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1069
Score = 29.9 bits (64), Expect = 9.4
Identities = 23/95 (24%), Positives = 30/95 (31%)
Query: 364 TQPDAPPSMFIQHSPQNTVHHNSVSVACATPTTAKPRASADGISKAPRPLSNILPSGGIR 423
TQP P + S V S+ T + + S DG+ A P P I
Sbjct: 391 TQPGGPTVTTPKSSALTGVTARKPSMPGPTSSPGATQGSTDGVVSAKPPTKKTTPQSVIP 450
Query: 424 PNSNVSTQTXXXXXXXXXKQRGKPGVRSPAPANKQ 458
P + T Q GV S P K+
Sbjct: 451 PGKTTAPTTKPPGSPAGSTQGPTDGVLSAKPPTKK 485
>SB_49878| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 283
Score = 29.9 bits (64), Expect = 9.4
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 204 PHMLTTQGKQVLQGQAAPFPGYTTIPAIPTTQNQTFVFSSNILPAHSQPTVSGITQQQKQ 263
P M++T G+Q +G PG++ +P++ +T Q + P HS P++ +Q+ +
Sbjct: 67 PSMMST-GEQKAKGGNILCPGHS-VPSMMSTGEQKAKGGNISCPGHSVPSIMSTGEQKAK 124
Query: 264 SDMHKCGG 271
C G
Sbjct: 125 GGNISCPG 132
>SB_47306| Best HMM Match : I-set (HMM E-Value=0)
Length = 1260
Score = 29.9 bits (64), Expect = 9.4
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 46 KNHKPGMSGEIKPQQIVEGQPQVVQHQLSMAQHEPS 81
K H P + E++P QI+EG+ V+ +++ + EPS
Sbjct: 1054 KGHAPKLIAEMRPMQIIEGEDAVMTCEVT-GKPEPS 1088
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.314 0.128 0.377
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,376,687
Number of Sequences: 59808
Number of extensions: 816841
Number of successful extensions: 1613
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1607
Number of HSP's gapped (non-prelim): 13
length of query: 888
length of database: 16,821,457
effective HSP length: 89
effective length of query: 799
effective length of database: 11,498,545
effective search space: 9187337455
effective search space used: 9187337455
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 64 (29.9 bits)
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