GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000509-TA|BGIBMGA000509-PA|undefined
         (888 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g20130.1 68417.m02945 ribulose-1,5 bisphosphate carboxylase/o...    34   0.48 
At5g44780.1 68418.m05488 expressed protein low similarity to SP|...    32   1.9  
At1g07640.2 68414.m00820 Dof-type zinc finger domain-containing ...    31   2.5  
At5g17510.1 68418.m02054 expressed protein                             31   3.4  
At5g03380.1 68418.m00291 heavy-metal-associated domain-containin...    30   5.9  
At1g25540.1 68414.m03171 phytochrome and flowering time regulato...    30   7.8  

>At4g20130.1 68417.m02945 ribulose-1,5 bisphosphate
           carboxylase/oxygenase large subunit
           N-methyltransferase-related contains weak similarity to
           Swiss-Prot:P94026 ribulose-1,5 bisphosphate
           carboxylase/oxygenase large subunit N-
           methyltransferase, chloroplast precursor (Ribulose-
           bisphosphate-carboxylase]-lysine N-methyltransferase,
           RuBisCO methyltransferase, RuBisco LSMT, rbcMT)
           [Nicotiana tabacum]
          Length = 483

 Score = 33.9 bits (74), Expect = 0.48
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 385 NSVSVACATPT-TAKPRASADGISKAPRPLSNIL--PSGGIRPNSNVSTQT 432
           +SVS+   T T  +KP+   +GI  APRP SN+L     G+RP    S +T
Sbjct: 3   SSVSLQFLTNTFISKPQGFCNGIVSAPRPRSNLLRDRQNGVRPIKVASIET 53


>At5g44780.1 68418.m05488 expressed protein low similarity to
           SP|Q38732 DAG protein, chloroplast precursor
           {Antirrhinum majus}
          Length = 723

 Score = 31.9 bits (69), Expect = 1.9
 Identities = 43/177 (24%), Positives = 59/177 (33%), Gaps = 20/177 (11%)

Query: 50  PGMSGEIKPQQI--VEGQPQVVQHQLSMAQHEPSQQHHQTVTVVSSMPSNMASHXXXXXX 107
           P   G +K +Q   + GQ Q  + Q+  +Q    Q   Q     S  PSN   +      
Sbjct: 309 PSFQGNVKQRQEMPIHGQGQAQRSQMPSSQGTLRQGQAQG----SQRPSNQVGYNQGQGA 364

Query: 108 XXXXXXXXSNAGITTMPPLQSLPSNAQHPQQLSAEWGHSRVQVIQQPLPNNAYLQQLYNT 167
                     A     PP Q  P+N      +    G  +  V+Q         Q+ YN 
Sbjct: 365 QTPPYHQGQGA---QTPPYQESPNNYGQGAFVQYNQGPPQGNVVQTT-------QEKYNQ 414

Query: 168 QGPLLMPGNIALHPGINSQQIQVIAAGKPFQGNQLGPHMLTTQGKQVLQGQAAPFPG 224
            G     GN A   G N    Q   + +   G   G  +L+       QGQ  P PG
Sbjct: 415 MGQ----GNYAPQSGGNYSPAQGAGSPRFGYGQGQGGQLLSPYRGNYNQGQGTPLPG 467


>At1g07640.2 68414.m00820 Dof-type zinc finger domain-containing
          protein identical to zinc finger protein OBP2
          GI:5059394 from [Arabidopsis thaliana]
          Length = 331

 Score = 31.5 bits (68), Expect = 2.5
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 45 DKNHKPGMSGEIKPQ-QIVEGQPQVVQHQLSMAQHEPSQQHHQTVTVVSSMPSNM 98
          + NH+  +  ++     I+ G   V+ HQL   Q  P+  HH   T  + +PS M
Sbjct: 4  NSNHQHHLQHQLNENGSIISGHGLVLSHQLPPLQANPNPNHHHVAT-SAGLPSRM 57


>At5g17510.1 68418.m02054 expressed protein
          Length = 369

 Score = 31.1 bits (67), Expect = 3.4
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 7/60 (11%)

Query: 49  KPGMSGEIKPQQIVEGQPQVVQHQLSMAQHEPS-------QQHHQTVTVVSSMPSNMASH 101
           KP + G   PQQ  + Q  + QHQL   Q +         Q+  Q    +S  PSN+  H
Sbjct: 5   KPPLGGNNNPQQQQQQQQLLYQHQLQQQQRQQQMLLLQQLQKQQQQQAAMSRFPSNIDVH 64


>At5g03380.1 68418.m00291 heavy-metal-associated domain-containing
           protein similar to farnesylated protein ATFP2
           [GI:4097545]; contains Pfam profile PF00403:
           Heavy-metal-associated domain
          Length = 392

 Score = 30.3 bits (65), Expect = 5.9
 Identities = 14/45 (31%), Positives = 20/45 (44%)

Query: 125 PLQSLPSNAQHPQQLSAEWGHSRVQVIQQPLPNNAYLQQLYNTQG 169
           P+   P    + QQ     G S    +Q+P  N  Y+Q+ Y  QG
Sbjct: 304 PMYYYPEGQVYGQQHYMMQGQSSQSYVQEPYSNQGYVQESYMNQG 348


>At1g25540.1 68414.m03171 phytochrome and flowering time regulatory
           protein (PFT1) PMID: 12815435
          Length = 836

 Score = 29.9 bits (64), Expect = 7.8
 Identities = 14/32 (43%), Positives = 17/32 (53%)

Query: 55  EIKPQQIVEGQPQVVQHQLSMAQHEPSQQHHQ 86
           +++ QQ    Q Q  QHQLS  QH   QQ  Q
Sbjct: 716 QLQQQQQQHQQQQQQQHQLSQLQHHQQQQQQQ 747


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.314    0.128    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,371,521
Number of Sequences: 28952
Number of extensions: 553136
Number of successful extensions: 1142
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1136
Number of HSP's gapped (non-prelim): 11
length of query: 888
length of database: 12,070,560
effective HSP length: 88
effective length of query: 800
effective length of database: 9,522,784
effective search space: 7618227200
effective search space used: 7618227200
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 64 (29.9 bits)