Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000508-TA|BGIBMGA000508-PA|undefined
(726 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g28770.1 68416.m03591 expressed protein 37 0.054
At5g60030.1 68418.m07527 expressed protein 32 1.2
At2g41960.1 68415.m05191 expressed protein 32 1.6
At1g67220.1 68414.m07651 zinc finger protein-related similar to ... 32 1.6
At3g52670.1 68416.m05802 F-box family protein contains F-box dom... 31 3.6
At2g42170.1 68415.m05219 actin, putative similar to actin 2 [Ara... 31 3.6
At1g58025.1 68414.m06576 DNA-binding bromodomain-containing prot... 31 3.6
At5g57590.1 68418.m07195 aminotransferase class III family prote... 30 4.7
At3g55670.1 68416.m06185 hypothetical protein various predicted ... 30 4.7
At1g61140.1 68414.m06888 SNF2 domain-containing protein / helica... 30 4.7
At5g62110.1 68418.m07796 hypothetical protein 29 8.3
At5g58680.1 68418.m07352 armadillo/beta-catenin repeat family pr... 29 8.3
At5g44310.2 68418.m05424 late embryogenesis abundant domain-cont... 29 8.3
At5g44310.1 68418.m05423 late embryogenesis abundant domain-cont... 29 8.3
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 29 8.3
At2g19390.1 68415.m02262 expressed protein 29 8.3
>At3g28770.1 68416.m03591 expressed protein
Length = 2081
Score = 36.7 bits (81), Expect = 0.054
Identities = 49/209 (23%), Positives = 85/209 (40%), Gaps = 10/209 (4%)
Query: 435 KSKVSASQKSGRSSYLETNNTVDTLNISYIKNNEEIETDIERNDGYVSVKNIYTIEHKNF 494
KSK S+ S SS E NN N+ N E E+ E+ DG V N + +N
Sbjct: 184 KSKSSSEASSEESSSTEHNNVTTGSNMVET-NGENSESTQEKGDG-VEGSNGGDVSMENL 241
Query: 495 TTITVNTLNETVSVESPNKTKITLDKYNHFEFDLDSVTKASFNGDTVNIDYTACVDCESK 554
V L E +V +T K N+ E +++S + G +I +A ++ +
Sbjct: 242 QGNKVEDLKEGNNVVENGET-----KENNGE-NVESNNEKEVEGQGESIGDSA-IEKNLE 294
Query: 555 TKCEIEIRAEKEKIDPKSLQKWLKMRDSFNKKIVVNEEGAINIEDHHCSSENINSGI-SK 613
+K +++ E K D S+ + L N ++ E + + +I + SK
Sbjct: 295 SKEDVKSEVEAAKNDGSSMTENLGEAQGNNGVSTIDNEKEVEGQGESIEDSDIEKNLESK 354
Query: 614 NDIGADVVSDYNLEGVEDEKFEGPSLSHG 642
D+ ++V + N K E ++G
Sbjct: 355 EDVKSEVEAAKNAGSSMTGKLEEAQRNNG 383
>At5g60030.1 68418.m07527 expressed protein
Length = 292
Score = 32.3 bits (70), Expect = 1.2
Identities = 44/203 (21%), Positives = 84/203 (41%), Gaps = 13/203 (6%)
Query: 426 SNNIDSESTKSKVSASQKSGRSSYLETNNTVDTLNISYIKNNEEIETDI----ERNDGYV 481
S++ +++ST++K S+ KS R+ E D I Y +N+E + + ER++ +
Sbjct: 66 SSDRETKSTETKQSSDAKSERNVIDE----FDGRKIRY-RNSEAVSVESVYGRERDEKKM 120
Query: 482 SV-KNIYTIEHKNFTTITVNTLNETVSVESPNKTKITLDKYNHFEFDLDSVTKASFNGDT 540
K+ ++ K + +E K K K N E +D K +
Sbjct: 121 KKSKDADVVDEKVNEKLEAEQRSEERRERKKEKKK---KKNNKDEDVVDEKVKEKLEDEQ 177
Query: 541 VNIDYTACVDCESKTKCEIEIRAEKEKIDPKSLQKWLKMRDSFNKKIVVNEEGAINIEDH 600
+ D +SK + ++ EKEK++ + +K + + VV+E+ +ED
Sbjct: 178 KSADRKERKKKKSKKNNDEDVVDEKEKLEDEQKSAEIKEKKKNKDEDVVDEKEKEKLEDE 237
Query: 601 HCSSENINSGISKNDIGADVVSD 623
S E K ++VS+
Sbjct: 238 QRSGERKKEKKKKRKSDEEIVSE 260
>At2g41960.1 68415.m05191 expressed protein
Length = 1215
Score = 31.9 bits (69), Expect = 1.6
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 425 NSNNIDSES-TKSKVSASQKSGRSSYLETNNTVDTLNISYIKNNEEIETDIERNDGYVSV 483
N+ NI+S S + S+V++ Q GR + ++T N + + ++ E+ D ER+ + +
Sbjct: 896 NNGNIESSSMSDSEVASQQSEGRENLVDTQNDMPDCHEKMVEKVTEMSMD-ERD--VLKI 952
Query: 484 KNIYTIEHKN 493
KNI + N
Sbjct: 953 KNISNLPADN 962
>At1g67220.1 68414.m07651 zinc finger protein-related similar to
SP|Q09472 E1A-associated protein p300 {Homo sapiens},
SP|Q92793 CREB-binding protein {Homo sapiens}; contains
Pfam profiles PF00569: Zinc finger ZZ type, PF00628:
PHD-finger, PF02135: TAZ zinc finger
Length = 1357
Score = 31.9 bits (69), Expect = 1.6
Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 504 ETVSVESPNKTKITLDKYNHFEFD---LDSVTKASFNGDTVNIDYTACVDCESKTKCEIE 560
E + + NK ++ D ++ + + VTK N DT ++ + C TKCE+
Sbjct: 509 EPMKCDEENKCEVNADTFDVVIVEPMKCNKVTKCEVNVDTTGVNIVEPMKCNEVTKCEVN 568
Query: 561 I 561
+
Sbjct: 569 V 569
Score = 31.5 bits (68), Expect = 2.0
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 529 DSVTKASFNGDTVNIDYTACVDCESKTKCEI 559
+ VTK N DT+ +D + C ++KCE+
Sbjct: 560 NEVTKCEVNVDTIGVDIVEPMKCNEESKCEV 590
>At3g52670.1 68416.m05802 F-box family protein contains F-box domain
Pfam:PF00646
Length = 384
Score = 30.7 bits (66), Expect = 3.6
Identities = 12/47 (25%), Positives = 23/47 (48%)
Query: 88 NKDGIACEEWRSHIPTPLCLQDFFDYTLEEHYEWIQKEEKAYDEHVI 134
+KD + E+W P CL + + Y+W ++EEK +++
Sbjct: 287 SKDNVVSEKWNEPKYVPECLLSHLETFVWIRYDWEREEEKEVATYIL 333
>At2g42170.1 68415.m05219 actin, putative similar to actin 2
[Arabidopsis thaliana] gi|9293903|dbj|BAB01806
Length = 329
Score = 30.7 bits (66), Expect = 3.6
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 634 FEGPSLSHGKCRDVYLAKTLRFFVLKRTLEQQWSDKERETLKGAKELL-FAVLRYRQVLE 692
+EG +L H R + L +++K +E+ ++ ERE ++ KE + L Y Q +E
Sbjct: 123 YEGSALPHAILRLDLAGRHLTNYLMKIMMERGYTSAEREVVRDIKEQFGYIALDYEQEME 182
>At1g58025.1 68414.m06576 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487; contains
prenyl group binding site (CAAX box) Prosite:PS00294
Length = 769
Score = 30.7 bits (66), Expect = 3.6
Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 12/136 (8%)
Query: 454 NTVDTLNISYIKNNEEIETDIERNDGYVSVKNIYTIEHKNFTTITVNTLNETVSVESPNK 513
N + ++I K E+ +T+I D VS K IE+K E V VES NK
Sbjct: 391 NMGEDMDIDVDKKPEQEKTEIVELDSPVS-KTQRVIENKQEVEE-----EENVEVESENK 444
Query: 514 TKITL-DKYNHFEFDLDSVTKASFNGDTVNIDYTACVDCESKTKCEIEIRAEKEKIDPKS 572
TK + DK + ++ N + A ++ T+ E E + ++ + K
Sbjct: 445 TKANVEDKTQSIDRSMEETGDEPVNSAAEKLVVLASLEGPKSTQNEEEEKEKRLQEQKKR 504
Query: 573 LQ----KW-LKMRDSF 583
L+ +W +KM++ F
Sbjct: 505 LELERKEWRMKMQEKF 520
>At5g57590.1 68418.m07195 aminotransferase class III family protein
low similarity to 7,8-diaminopelargonic acid
aminotransferase BioA [Mesorhizobium loti] GI:12044306;
contains Pfam profile PF00202: aminotransferase, class
III
Length = 523
Score = 30.3 bits (65), Expect = 4.7
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Query: 45 YFEDFTGISAFQIILE-AFNTFNCVDYKYCEVTD 77
YF D G +A +I L+ AF F CVD+ +CE T+
Sbjct: 127 YFSD-NGSTAIEIALKMAFRKF-CVDHNFCEATE 158
>At3g55670.1 68416.m06185 hypothetical protein various predicted
proteins, Arabidopsis thaliana
Length = 218
Score = 30.3 bits (65), Expect = 4.7
Identities = 12/46 (26%), Positives = 21/46 (45%)
Query: 89 KDGIACEEWRSHIPTPLCLQDFFDYTLEEHYEWIQKEEKAYDEHVI 134
KDG+ +W P CL + + Y W ++EEK +++
Sbjct: 147 KDGVVVGKWNQPKNVPQCLLSHLETFVWTRYRWEREEEKEEATYIL 192
>At1g61140.1 68414.m06888 SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
similar to ATPase [Homo sapiens] GI:531196; contains
Pfam profiles PF00271: Helicase conserved C-terminal
domain, PF00176: SNF2 family N-terminal domain, PF00097:
Zinc finger, C3HC4 type (RING finger)
Length = 1287
Score = 30.3 bits (65), Expect = 4.7
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 424 FNSNNIDSESTKSKVSASQK----SGRSSYLETNNTVDTLNISYIKNNEEIETDIE 475
FN++N S+S + VS++Q SG S T N+V + N EE D+E
Sbjct: 197 FNNSNSLSDSADNYVSSAQDCYNTSGTSLSDHTPNSVQNFAFEFFPNKEEAVNDVE 252
>At5g62110.1 68418.m07796 hypothetical protein
Length = 691
Score = 29.5 bits (63), Expect = 8.3
Identities = 16/64 (25%), Positives = 30/64 (46%)
Query: 441 SQKSGRSSYLETNNTVDTLNISYIKNNEEIETDIERNDGYVSVKNIYTIEHKNFTTITVN 500
+Q +G S+ N+ V I++ + ++ N ++ +I NFTT+ VN
Sbjct: 569 NQVNGNSNEETLNSIVANSEINFTTLDVNTINQVDNNFNEETLNSIAANSEMNFTTLDVN 628
Query: 501 TLNE 504
+NE
Sbjct: 629 IINE 632
>At5g58680.1 68418.m07352 armadillo/beta-catenin repeat family
protein contains Pfam profile: PF00514
armadillo/beta-catenin-like repeats (4 copies)
Length = 357
Score = 29.5 bits (63), Expect = 8.3
Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 535 SFNGDTVNIDYTACVDCESKTKCEIEIRAEKEKIDPKSLQKWLKMRDSFNKKIVVNEEGA 594
SF+ ++N D +A DC S CE + + L + D + ++ + E +
Sbjct: 13 SFSDISLNFDSSAFSDCNSDISCEFPTTTSESRQRKLFLSCAVDNSDDVIRNLITHLESS 72
Query: 595 INIEDHHCSSENINSGISKN 614
+IE+ ++ I +SKN
Sbjct: 73 SSIEEQKQAAMEIRL-LSKN 91
>At5g44310.2 68418.m05424 late embryogenesis abundant
domain-containing protein / LEA domain-containing
protein low similarity to 51 kDa seed maturation protein
[Glycine max] GI:414977; contains Pfam profile PF02987:
Late embryogenesis abundant protein
Length = 331
Score = 29.5 bits (63), Expect = 8.3
Identities = 53/235 (22%), Positives = 98/235 (41%), Gaps = 23/235 (9%)
Query: 492 KNFTTITVNTLNETVSVESPNKTKITLDKYNHFEFDLDSVTK--ASFNGDTVNIDYTACV 549
K++ T N +NE S + +K T +K +D+ TK A D VN +
Sbjct: 105 KDYAEQTKNKVNEGAS-RAADKAYETKEKAKDKAYDVKEKTKDYAEEAKDKVNEGASRAA 163
Query: 550 D--CESKTKCEIEIRAEKEKIDPKSLQKWLKMRDSFNK---KIVVNEEGAINIEDHHCSS 604
D E+K K + + KEK + + K+ + ++ K +E N + +
Sbjct: 164 DKAYETKEKAKDKAYDVKEKTKDFAEETKEKVNEGASRAADKAYDVKEKTKNYAEQ--TK 221
Query: 605 ENINSGISKNDIGADVVSDYNLEGVEDEKFEGPSLSHG---KCRDVYLAKTLRFFVLKRT 661
+ +N G S+ A+ D + ED K + ++HG K +D+ KT+ T
Sbjct: 222 DKVNEGASRAADKAEETKDKAKDYAEDSKEKAEDMAHGFKEKAQDIG-EKTM------DT 274
Query: 662 LEQQWSDKERETLKGAKELLFAVLRYRQVLEDDRQRLLDMSVLDQRAEDERHIDD 716
++ W + + T + E + DD + L+ L ++A++ R+ DD
Sbjct: 275 VKDVW-ETAKSTAQKVTEAVVGSGEEADKARDDVDKGLE--DLSKKAKENRNKDD 326
>At5g44310.1 68418.m05423 late embryogenesis abundant
domain-containing protein / LEA domain-containing
protein low similarity to 51 kDa seed maturation protein
[Glycine max] GI:414977; contains Pfam profile PF02987:
Late embryogenesis abundant protein
Length = 295
Score = 29.5 bits (63), Expect = 8.3
Identities = 53/235 (22%), Positives = 98/235 (41%), Gaps = 23/235 (9%)
Query: 492 KNFTTITVNTLNETVSVESPNKTKITLDKYNHFEFDLDSVTK--ASFNGDTVNIDYTACV 549
K++ T N +NE S + +K T +K +D+ TK A D VN +
Sbjct: 69 KDYAEQTKNKVNEGAS-RAADKAYETKEKAKDKAYDVKEKTKDYAEEAKDKVNEGASRAA 127
Query: 550 D--CESKTKCEIEIRAEKEKIDPKSLQKWLKMRDSFNK---KIVVNEEGAINIEDHHCSS 604
D E+K K + + KEK + + K+ + ++ K +E N + +
Sbjct: 128 DKAYETKEKAKDKAYDVKEKTKDFAEETKEKVNEGASRAADKAYDVKEKTKNYAEQ--TK 185
Query: 605 ENINSGISKNDIGADVVSDYNLEGVEDEKFEGPSLSHG---KCRDVYLAKTLRFFVLKRT 661
+ +N G S+ A+ D + ED K + ++HG K +D+ KT+ T
Sbjct: 186 DKVNEGASRAADKAEETKDKAKDYAEDSKEKAEDMAHGFKEKAQDIG-EKTM------DT 238
Query: 662 LEQQWSDKERETLKGAKELLFAVLRYRQVLEDDRQRLLDMSVLDQRAEDERHIDD 716
++ W + + T + E + DD + L+ L ++A++ R+ DD
Sbjct: 239 VKDVW-ETAKSTAQKVTEAVVGSGEEADKARDDVDKGLE--DLSKKAKENRNKDD 290
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 29.5 bits (63), Expect = 8.3
Identities = 16/38 (42%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
Query: 350 NVYKMKNILIRTATDFCLGEIFSRRTDGTNILLNKDGV 387
NVY +KN LI T TD CL +FS+ +++++ +DG+
Sbjct: 203 NVY-VKN-LIETVTDDCLHTLFSQYGTVSSVVVMRDGM 238
>At2g19390.1 68415.m02262 expressed protein
Length = 1211
Score = 29.5 bits (63), Expect = 8.3
Identities = 40/168 (23%), Positives = 67/168 (39%), Gaps = 8/168 (4%)
Query: 454 NTVDTLNISYIKNNEEIETDIERNDG-YVSVKNIYTIEHKNFTTITVNTLNETVSVESPN 512
+ ++ + + +NNE +E D NDG + K + H N+ + V ++
Sbjct: 781 SVLNNMEFNGFRNNERLELDESENDGSAILFKGVDKSAHHCNGKFPDNSPIDFVDIQYDK 840
Query: 513 ---KTKITLDKYN-HFEFDL-DSVTKASFNGDTVNIDYTACVDC-ESKTKCEIEIRAEKE 566
KI L+ + DL S++ G I C E K EI R K
Sbjct: 841 LGIDEKIYLEAQSLGISIDLMPSISNVEDEGIADEIKKLEEAICNEGSKKKEIVDRLLKP 900
Query: 567 KIDPKSLQKWLKMRDSFNKKI-VVNEEGAINIEDHHCSSENINSGISK 613
I+ K LQ+ + + K I + E+ + H+ +N N+ ISK
Sbjct: 901 AIEMKELQEKELDQLGYEKLIEMAYEKSKASRRHHNAGGKNSNNKISK 948
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.316 0.134 0.386
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,984,887
Number of Sequences: 28952
Number of extensions: 666847
Number of successful extensions: 1907
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1893
Number of HSP's gapped (non-prelim): 25
length of query: 726
length of database: 12,070,560
effective HSP length: 86
effective length of query: 640
effective length of database: 9,580,688
effective search space: 6131640320
effective search space used: 6131640320
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 63 (29.5 bits)
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