Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000508-TA|BGIBMGA000508-PA|undefined
(726 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 29 2.3
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom... 29 3.0
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 28 4.0
SPAC15A10.02 |taf12||transcription factor TFIID complex subunit ... 28 5.3
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit... 28 5.3
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 28 5.3
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce... 28 5.3
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos... 28 5.3
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S... 27 7.0
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce... 27 7.0
SPCC1450.03 |||ribonucleoprotein |Schizosaccharomyces pombe|chr ... 27 9.2
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 29.1 bits (62), Expect = 2.3
Identities = 38/183 (20%), Positives = 72/183 (39%), Gaps = 13/183 (7%)
Query: 426 SNNIDSESTKSKVSASQKSGRSSYLETNNTVDTLNISYIKNNEEIETDIERND-----GY 480
SN+ S S+ + ++AS + SS + +N+T+ T + ++ + I N
Sbjct: 87 SNSTISTSSSTPITASVPT--SSSILSNSTIPTTSPVPTTSSTPTSSSILSNSTIPSSSS 144
Query: 481 VSVKNIYTI---EHKNFTTITVNTLNETVSVESPNKTKITLDKYNHFEFDLDSVTKASFN 537
+S I T FTT V+ +TV V P IT + + + + T + +
Sbjct: 145 ISASTITTTIISGSTQFTTTFVDQSIDTVEVVIPTAGYITTTLTSGSSYPVSTTTLQTVS 204
Query: 538 GDTVNIDYTACVDCESKTKCEIEIRAEKEKIDPKSLQKWLKMRDSFNKKIVVNEEG---A 594
G + C + +R + I+P + K + D + + EG A
Sbjct: 205 GTQSGLVEVITPSCGCNPENSFHLRLVGDSINPSYVYKNTNVSDPDEGNMYTSTEGNTEA 264
Query: 595 INI 597
+N+
Sbjct: 265 VNV 267
>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 892
Score = 28.7 bits (61), Expect = 3.0
Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 6/100 (6%)
Query: 425 NSNNIDSESTKSKVSASQKSGRSSYLETNNTVDTLNISYIKNNEEIETDIERNDGYVSVK 484
NS I +S + S+ R++ ++ + T +N +Y + I +ER+D V
Sbjct: 692 NSYRITVRQLESMIRLSEAIARANCVD-DITPAFVNEAYSLLRQSI-IHVERDDIEVEED 749
Query: 485 NIYTIEHKNFTTITVNTLNETVSVE---SPNKTKITLDKY 521
+ E +N T T N N+ VS E K KIT DKY
Sbjct: 750 DAEAQELENDNTNTTNG-NDNVSSEEALQKPKVKITYDKY 788
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 28.3 bits (60), Expect = 4.0
Identities = 44/194 (22%), Positives = 77/194 (39%), Gaps = 10/194 (5%)
Query: 425 NSNNIDSESTKSKVSASQK--SGRSSYLETNNTVDTLNISYIKNNEEIETDIERNDGYVS 482
+S ++++E T++ A K S S E + + N N EE ++D+
Sbjct: 370 DSTSVEAEKTETDEPAVGKGASDVSDTAEISEKTEAKNADSEANLEE-KSDVGEEKESKD 428
Query: 483 VKNIYTIEHKNFTTITVNTLNE-TVSVESPNKTKITLDKYNHFEFDLDSVTKASFNGDTV 541
N ++ HK+ NE T E+ K K T D D D T + D V
Sbjct: 429 ENNKASL-HKDVEEKDTKITNEDTGKTETDVKAKET-DSIE--ANDKDEKTDSKETEDKV 484
Query: 542 NIDYTACVDCESKTKCEIEIRAEKEKIDPKSLQKWLKMRDS--FNKKIVVNEEGAINIED 599
+ D ++K IE+ ++EK D K ++ DS N+K ++ N +
Sbjct: 485 EETESKEADVKAKETDSIEVDDKEEKTDSKETADKVEQTDSKDTNEKPAKDDNKEANEKA 544
Query: 600 HHCSSENINSGISK 613
S+++ I +
Sbjct: 545 EKVDSKDVKEKIEE 558
>SPAC15A10.02 |taf12||transcription factor TFIID complex subunit A
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 27.9 bits (59), Expect = 5.3
Identities = 11/37 (29%), Positives = 25/37 (67%)
Query: 428 NIDSESTKSKVSASQKSGRSSYLETNNTVDTLNISYI 464
N+ +EST+ SA+Q+SG ++ +E + T ++ +++
Sbjct: 256 NVSNESTELATSATQQSGLANNVEKSQTPSYMSANHL 292
>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ysh1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 27.9 bits (59), Expect = 5.3
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Query: 496 TITVNTLNETVSVES-PNKTKITLDKYNHFEFDLDSVTKASFNGDTVN--IDYTACVDCE 552
TI + + + +ES P K+T K NH LD K S D + + + E
Sbjct: 601 TIADSVITILLGIESSPASVKLTSHKCNHLHSHLDKPPKVSKEEDRIKKLMMFLDNQFGE 660
Query: 553 SKTKCE--IEIRAEK 565
S TK E +EI+ EK
Sbjct: 661 SMTKTEKGVEIKFEK 675
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 27.9 bits (59), Expect = 5.3
Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 6/125 (4%)
Query: 595 INIEDHHC-SSENINSGISKNDIGADVVSDYNLEGVEDEKFEGPSLSHGKCR---DVYLA 650
I+ D +C E +S S+ + + V D + D+KF SL + R + Y
Sbjct: 822 IDFNDIYCVDPETGHSYRSREECHYEFVDDVVKQIGSDQKFSMMSLEEIEKRTWDNCYCT 881
Query: 651 KTLRFFVLKRTLEQQWSDKERETLKGAKELLFAVLRYRQVLEDDR--QRLLDMSVLDQRA 708
+K L ++ ET+K A+E+ VL + +EDD+ QR M++ +
Sbjct: 882 PKQFVHDIKLILRDALQLEDSETIKRAQEMYANVLLGVEDMEDDQFSQRCERMALREAER 941
Query: 709 EDERH 713
RH
Sbjct: 942 RKLRH 946
>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 27.9 bits (59), Expect = 5.3
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 425 NSNNIDSESTKSKVSASQKSGRSSYLETNNTVDTLNISYIKNNEEIETDIERNDGYVSVK 484
++++ D+ ST S + SQ S RS + N + +E E+DI ++D S
Sbjct: 357 DTHSEDNASTASSEAISQ-SMRSFQPQPNTGSPFPRFTSTNTEDEQESDIPQSDANDSTV 415
Query: 485 NIYTIEHKNFT-TITVNTLNETVSVESP 511
N+ + N T T V+ T S SP
Sbjct: 416 NLNQPNYANLTPTPQVSPKRPTYSRSSP 443
>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 701
Score = 27.9 bits (59), Expect = 5.3
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 351 VYKMKNILIRTATDFCLG 368
+YK++NIL+R TDF G
Sbjct: 527 IYKLQNILVRELTDFTTG 544
>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1842
Score = 27.5 bits (58), Expect = 7.0
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 451 ETNNTVDTLNISYIKNNEEIETDIERNDGYVSVKNIYTIEHKNFT 495
ET T+ +L S +NE + D+E +S+ N IE +NFT
Sbjct: 1706 ETTRTLQSLTTSLTNSNENVGVDVELVSA-ISIDNETFIE-RNFT 1748
>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 747
Score = 27.5 bits (58), Expect = 7.0
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 427 NNIDSESTKSKVSASQKSGRSSYLETNNTVDTLNISYIKNNEEIETDIE 475
+N+DS+ S V S + + + + N + IS I N E+E + E
Sbjct: 414 SNVDSDEIPSNVMLSVCTNLINEVASQNKYSSTEISQITTNREVEEENE 462
>SPCC1450.03 |||ribonucleoprotein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 240
Score = 27.1 bits (57), Expect = 9.2
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 692 EDDRQRLLDMSVLDQRAEDER-HIDDIIQALGYRLQ 726
E+ RQR LD S D E+E +ID+ + GY ++
Sbjct: 120 EEMRQRRLDFSSEDGEEEEENDYIDEDVDEAGYDIE 155
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.134 0.386
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,197,492
Number of Sequences: 5004
Number of extensions: 137620
Number of successful extensions: 427
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 423
Number of HSP's gapped (non-prelim): 13
length of query: 726
length of database: 2,362,478
effective HSP length: 78
effective length of query: 648
effective length of database: 1,972,166
effective search space: 1277963568
effective search space used: 1277963568
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 57 (27.1 bits)
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