GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000508-TA|BGIBMGA000508-PA|undefined
         (726 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0964 - 29749624-29749649,29749742-29749945,29750036-297506...    35   0.26 
02_05_0566 - 30017031-30017309,30018077-30018172,30018261-300183...    33   0.61 
08_02_0593 + 19078264-19078609,19078724-19082256                       32   1.4  
10_08_0293 - 16561932-16562216,16562928-16562936,16563188-165632...    32   1.9  
10_08_0571 - 18855317-18855541,18855667-18855747,18855849-188559...    29   9.9  
09_02_0250 + 6266818-6267029,6267230-6267287,6267999-6268118,627...    29   9.9  

>04_04_0964 -
           29749624-29749649,29749742-29749945,29750036-29750634,
           29750742-29750826,29750914-29751562,29751568-29751643,
           29753891-29753957,29754097-29754998,29756579-29756790
          Length = 939

 Score = 34.7 bits (76), Expect = 0.26
 Identities = 22/70 (31%), Positives = 41/70 (58%), Gaps = 7/70 (10%)

Query: 450 LETNNTVDTLN----ISY-IKN-NEEIETDIER-NDGYVSVKNIYTIEHKNFTTITVNTL 502
           +E+N + + LN    ISY +KN  + I  ++E  N+G+ S+K    +E + F   ++N +
Sbjct: 539 IESNFSPEQLNNIILISYGVKNIGDRISAELENWNNGFTSLKGSPELERERFIWASINYI 598

Query: 503 NETVSVESPN 512
           NE + +E+ N
Sbjct: 599 NEVIVMENFN 608


>02_05_0566 -
           30017031-30017309,30018077-30018172,30018261-30018377,
           30018538-30018667,30018866-30019029,30019480-30019485
          Length = 263

 Score = 33.5 bits (73), Expect = 0.61
 Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 13/116 (11%)

Query: 422 GLFNSNNIDSESTKSKVSASQKSGRSSYLETNNTVDTLNISYIKNNEEIETDIERNDGYV 481
           G F++ N     T S  SAS   G+    +T   V  LNI+ ++  +    D+  +D YV
Sbjct: 76  GSFDATNAVKSVTSSISSAS---GKHVADDTREFVGELNITVVRGIQLAVRDMLTSDPYV 132

Query: 482 SVKNIYTI-EHKNFTTITVNTL----NETVSVESP-NKTKITLDKYNHFEFDLDSV 531
               + T+ E K  TT+  + L    NE + +  P N   + L+ Y+H  F  D +
Sbjct: 133 ----VLTLGEQKAQTTVKPSDLNPVWNEVLKISIPRNYGPLKLEVYDHDTFSADDI 184


>08_02_0593 + 19078264-19078609,19078724-19082256
          Length = 1292

 Score = 32.3 bits (70), Expect = 1.4
 Identities = 11/46 (23%), Positives = 30/46 (65%)

Query: 142 TDLNQYDPNSCLDNVIGDELLIEGSLKHREIKQNEVISPEITEVKT 187
           TD +++  N C  N++G   +++G+++++E+++ EV      +V++
Sbjct: 422 TDGSKHSVNQCTANIVGAVGVLDGTVQYQELEEGEVADEAYCDVES 467


>10_08_0293 -
           16561932-16562216,16562928-16562936,16563188-16563264,
           16563414-16563813
          Length = 256

 Score = 31.9 bits (69), Expect = 1.9
 Identities = 15/67 (22%), Positives = 36/67 (53%), Gaps = 3/67 (4%)

Query: 578 KMRDSFNKKIVVNEEGAINIEDHHCSSENINSGISKNDIGADVVSDYNLEGVEDEKFEGP 637
           K +D  ++    N++G   I D+    ++++SG   ++   + ++DY+ EG +D +++  
Sbjct: 189 KTQDHPSRSQYFNQDGCKEIMDYSLPRDDLSSG---SECMLEELNDYSSEGFQDFRWDSD 245

Query: 638 SLSHGKC 644
              +G C
Sbjct: 246 KQEYGPC 252


>10_08_0571 -
           18855317-18855541,18855667-18855747,18855849-18855963,
           18856061-18856224,18856307-18856540,18856626-18856781,
           18857113-18857244,18857850-18857984,18858071-18858457,
           18858708-18858826,18858914-18859124,18859268-18859339,
           18859542-18859628,18859993-18860127,18860240-18860368
          Length = 793

 Score = 29.5 bits (63), Expect = 9.9
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 506 VSVESPNKTKITLDKYNHFEFDLDSVTKASFNGDTV-NIDYTACVDCESK 554
           VS+   +   ++L   + F+ D+  V K  F  DT+ NID   C+ C S+
Sbjct: 586 VSIGESHVCTLSLPDVSKFDEDIVKVGKLFFKSDTMFNIDPGFCMSCRSQ 635


>09_02_0250 +
           6266818-6267029,6267230-6267287,6267999-6268118,
           6272359-6272511,6273381-6273586,6274280-6274733,
           6276573-6276610,6276923-6277046,6277184-6277246,
           6277350-6277412,6277526-6278152,6278267-6278294,
           6278373-6278413,6278689-6278851,6278987-6279039,
           6279217-6279262,6279373-6279444,6279578-6279741,
           6279968-6280099,6280249-6280565,6280721-6280892,
           6281009-6281107,6281275-6281349,6281446-6281504,
           6281647-6281836,6281982-6282020
          Length = 1255

 Score = 29.5 bits (63), Expect = 9.9
 Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 6/83 (7%)

Query: 567 KIDPKSLQKWLKMRDSFNKKIVVNEEGAINIEDHHCSSE-NINSG---ISKN-DIGADVV 621
           K  PK L  W+  R   +   ++  +  I + +H  +    + +G     KN DIG +++
Sbjct: 548 KSAPKKLASWVAKRFDLSSSEIILRDKVIPVTEHSVTVVLGLPTGRRDFGKNFDIGKEII 607

Query: 622 -SDYNLEGVEDEKFEGPSLSHGK 643
            S + L  +   KF G  L H K
Sbjct: 608 LSRFGLSVLPSVKFFGDLLKHNK 630


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.316    0.134    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,239,341
Number of Sequences: 37544
Number of extensions: 710074
Number of successful extensions: 1582
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1580
Number of HSP's gapped (non-prelim): 7
length of query: 726
length of database: 14,793,348
effective HSP length: 87
effective length of query: 639
effective length of database: 11,527,020
effective search space: 7365765780
effective search space used: 7365765780
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 63 (29.5 bits)