GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000508-TA|BGIBMGA000508-PA|undefined
         (726 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcript...    27   1.7  
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    26   3.1  
AJ438610-4|CAD27476.1|  593|Anopheles gambiae putative transcrip...    25   9.3  
AF281078-1|AAF82131.1| 2051|Anopheles gambiae vitellogenin 1 pro...    25   9.3  

>AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1049

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 7/106 (6%)

Query: 7   SESRSIKFVFDCPDISELVSETEIVNEKPSSHLIDD--FDYFEDFTGISAFQIILE---- 60
           S  R +  V +   + E+V    +       H + D  F + +  + + A   +LE    
Sbjct: 529 SAFRPLGLVDNLAKVQEMVILDRLTKYTEGPHGLSDRQFGFRKKRSTVDAILAVLEKGIA 588

Query: 61  AFNTFNCVDYKYCEVTDTFVLMFFNSHNKDGIACEEWRSHIPTPLC 106
           AF    C   +YC +    V   FNS + + IA    R  IP  LC
Sbjct: 589 AFQRKRC-GARYCALITIDVKNAFNSASWEEIAAAVERMKIPPHLC 633


>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 14/54 (25%), Positives = 25/54 (46%)

Query: 428 NIDSESTKSKVSASQKSGRSSYLETNNTVDTLNISYIKNNEEIETDIERNDGYV 481
           N++ +  + K  +S K+  +  L  N T D  +  Y K   E+   IE  D ++
Sbjct: 766 NVEKKLAEVKAKSSDKNSTARALCANKTPDKPDFPYRKEFTELPDTIELVDAHL 819


>AJ438610-4|CAD27476.1|  593|Anopheles gambiae putative
           transcription factor protein.
          Length = 593

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)

Query: 138 QSQFTDLN-QYDPNSCLDNVIGDELLIEGSL 167
           Q+   D+N   +   C+D V+  EL +EGSL
Sbjct: 502 QTNIDDININVEAFPCVDEVLKHELSLEGSL 532


>AF281078-1|AAF82131.1| 2051|Anopheles gambiae vitellogenin 1
           protein.
          Length = 2051

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 16/53 (30%), Positives = 24/53 (45%)

Query: 425 NSNNIDSESTKSKVSASQKSGRSSYLETNNTVDTLNISYIKNNEEIETDIERN 477
           +S++  S+S     S+S  S  SS  E  N   +    Y K  +E+E    RN
Sbjct: 368 SSSSSSSDSDSDSSSSSDSSSSSSEEEAENFKISTAEQYKKQAKEVERRGNRN 420


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.316    0.134    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 680,728
Number of Sequences: 2123
Number of extensions: 26647
Number of successful extensions: 43
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 40
Number of HSP's gapped (non-prelim): 5
length of query: 726
length of database: 516,269
effective HSP length: 69
effective length of query: 657
effective length of database: 369,782
effective search space: 242946774
effective search space used: 242946774
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 51 (24.6 bits)