GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000508-TA|BGIBMGA000508-PA|undefined
         (726 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    27   0.41 
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    26   1.2  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    25   1.6  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   8.8  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   8.8  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   8.8  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   8.8  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 27.5 bits (58), Expect = 0.41
 Identities = 22/90 (24%), Positives = 47/90 (52%), Gaps = 11/90 (12%)

Query: 424 FNSNNIDSESTKSKVSASQKSGRSSYLETNNTVDTLNISYIKNNEEIETDIERNDGYVSV 483
           +N+N++D++   +K+SA +    +      NT+D+ N S ++ N+ I  +I+        
Sbjct: 374 YNNNDLDTKKWNNKISALR--ALNDLYNVKNTLDSYNGS-MEINQNIAQNIDH------A 424

Query: 484 KNIYTIEHKNFTTITVNTLNETVSVESPNK 513
           KN   I+++N   +++N    T+  E  N+
Sbjct: 425 KNT-IIDYRN-NDLSINEEKRTIENEQLNR 452



 Score = 24.2 bits (50), Expect = 3.8
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 4/28 (14%)

Query: 428 NIDSESTKSKVSASQKSGRSSYLETNNT 455
           N+  EST+S  +    +G  SYL TNNT
Sbjct: 708 NVPKESTQSLTT----TGNVSYLTTNNT 731


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 25.8 bits (54), Expect = 1.2
 Identities = 26/118 (22%), Positives = 52/118 (44%), Gaps = 5/118 (4%)

Query: 435 KSKVSASQKSGRSSYLETNNTVDT--LNISYIKNNEEIETDIERNDGYVSVKNIYTIEHK 492
           KS+ S+ + +      ET +  DT  LN+ +++    + T+       V++  + +   +
Sbjct: 38  KSRQSSFEVTSLLMREETEDAEDTQTLNLKHLRAAVLVLTNPSNEVVAVALGALLSKGEE 97

Query: 493 NFTTITVNTLNETV-SVESPNKTKITLDKYNHFEFDLDSVTKASFNGDTVNIDYTACV 549
           +F T    +L + + +VE+     +  D Y    +D D      F+     + YTACV
Sbjct: 98  SFPT--ARSLEKLLCNVEAEENYNLLEDIYETLSYDCDVDVSTFFDQLGQEVIYTACV 153


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 10/30 (33%), Positives = 20/30 (66%)

Query: 455 TVDTLNISYIKNNEEIETDIERNDGYVSVK 484
           TVD  +++  +++ +IE  I+  D Y+SV+
Sbjct: 172 TVDLRHLAQTEDSNQIEVGIDLTDYYISVE 201


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 2/24 (8%)

Query: 502 LNETVSVES--PNKTKITLDKYNH 523
           L+E +S E+  PNKT+ TL  Y H
Sbjct: 235 LDEPLSGETNDPNKTEYTLKIYTH 258


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 5/49 (10%)

Query: 427 NNIDSESTKSKVSASQKSGRSSYLETNNTVDTLNISYIKNNEEIETDIE 475
           +++D+ +T  +  +SQ     +YL  ++   TLNI  +K +E+ +  IE
Sbjct: 363 SSLDNTNTNDQDYSSQ-----NYLTVHSFPSTLNIPSVKIDEDQKCSIE 406


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 7/64 (10%)

Query: 426 SNNIDSESTKSKVSASQKSGRSSYLETNNTVDTLNISYIK-------NNEEIETDIERND 478
           +N I  +S K + +           ET +  DT+ I  ++       N+E IETD +R  
Sbjct: 150 NNKITMKSKKEQNAEEDIVDPVEENETYDEFDTIRIPIVRSLSKSPPNDEGIETDSDRRK 209

Query: 479 GYVS 482
           G ++
Sbjct: 210 GSIA 213


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 2/24 (8%)

Query: 502 LNETVSVES--PNKTKITLDKYNH 523
           L+E +S E+  PNKT+ TL  Y H
Sbjct: 235 LDEPLSGETNDPNKTEYTLKIYTH 258


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.134    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,017
Number of Sequences: 429
Number of extensions: 8382
Number of successful extensions: 28
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 23
Number of HSP's gapped (non-prelim): 10
length of query: 726
length of database: 140,377
effective HSP length: 63
effective length of query: 663
effective length of database: 113,350
effective search space: 75151050
effective search space used: 75151050
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 47 (23.0 bits)