Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000507-TA|BGIBMGA000507-PA|undefined
         (365 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    24   1.5  
AM292383-1|CAL23195.2|  320|Tribolium castaneum gustatory recept...    23   3.5  
AM292358-1|CAL23170.2|  331|Tribolium castaneum gustatory recept...    23   3.5  
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    23   3.5  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   4.6  
DQ855499-1|ABH88186.1|  124|Tribolium castaneum chemosensory pro...    22   8.0  

>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 13/38 (34%), Positives = 21/38 (55%)

Query: 253 NPSPTAETSGQFKAAKRGQSQTELLKEKSFKFWDDLQN 290
           +PSPT+  S + K + R +  T  +  +SF +   LQN
Sbjct: 115 SPSPTSSVSPEVKDSSRDRPFTCEVCNRSFGYKHVLQN 152


>AM292383-1|CAL23195.2|  320|Tribolium castaneum gustatory
          receptor candidate 62 protein.
          Length = 320

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 8/20 (40%), Positives = 12/20 (60%)

Query: 9  VADENYWRRNIEDAKLDEEN 28
          +   N W + +E+ KLD EN
Sbjct: 80 ITKRNQWCKLLENLKLDREN 99


>AM292358-1|CAL23170.2|  331|Tribolium castaneum gustatory
          receptor candidate 37 protein.
          Length = 331

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 8/20 (40%), Positives = 12/20 (60%)

Query: 9  VADENYWRRNIEDAKLDEEN 28
          +   N W + +E+ KLD EN
Sbjct: 80 ITKRNQWCKLLENLKLDREN 99


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 8/20 (40%), Positives = 12/20 (60%)

Query: 9   VADENYWRRNIEDAKLDEEN 28
           +   N W + +E+ KLD EN
Sbjct: 400 ITKRNQWCKLLENLKLDREN 419


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 3/58 (5%)

Query: 240 IGVPITAIVQIRINPSPTAETSGQFKAAKRGQS---QTELLKEKSFKFWDDLQNLRVQ 294
           IG  ++A++QI +   P  +   + + ++RG     Q E   EK      ++ N R++
Sbjct: 781 IGSGLSAVIQISVQAPPQFDIKLRNQTSRRGDPAVLQCEAKGEKPIGILWNINNKRLE 838


>DQ855499-1|ABH88186.1|  124|Tribolium castaneum chemosensory
           protein 13 protein.
          Length = 124

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 7/24 (29%), Positives = 13/24 (54%)

Query: 311 PPYWDNEKMSGSPDKIYDEDHQDY 334
           P +W+  +    P  IY + +Q+Y
Sbjct: 93  PEWWEQLQKKFDPQGIYKKRYQNY 116


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.134    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,458
Number of Sequences: 317
Number of extensions: 3480
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 6
length of query: 365
length of database: 114,650
effective HSP length: 58
effective length of query: 307
effective length of database: 96,264
effective search space: 29553048
effective search space used: 29553048
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 44 (21.8 bits)