Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000507-TA|BGIBMGA000507-PA|undefined
(365 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 32 0.15
SPAC26F1.12c |||conserved eukaryotic protein|Schizosaccharomyces... 30 0.45
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 27 3.2
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 4.2
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa... 27 4.2
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 27 5.5
SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dp... 26 7.3
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S... 26 7.3
SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|c... 26 7.3
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei... 26 9.6
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 26 9.6
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 26 9.6
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|... 26 9.6
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 31.9 bits (69), Expect = 0.15
Identities = 34/143 (23%), Positives = 68/143 (47%), Gaps = 11/143 (7%)
Query: 18 NIEDAKLDEENWKVKVTILEAADSDNARNYLNK-----FEIFATEE-KRFVIKSISKTET 71
++E + + ++W ++ LE A D+ +N+L K I + EE K K I++ +
Sbjct: 1324 DLEKLQHEHDDWLIQRGDLEKALKDSEKNFLRKEAEMTENIHSLEEGKEETKKEIAELSS 1383
Query: 72 TFMVNQLGGEK-KNKEDDSCRVFEEGQLYLKEKKEMPAHVQALIIKHLILKMKEEYLLIK 130
NQL K KN+ D + + LKEK+ + ++ + + KE LL
Sbjct: 1384 RLEDNQLATNKLKNQLDHLNQEIRLKEDVLKEKESLIISLEESLSNQ---RQKESSLLDA 1440
Query: 131 RRRLE-VKEGMRRESITMVDRSE 152
+ LE + + R++ +++++ E
Sbjct: 1441 KNELEHMLDDTSRKNSSLMEKIE 1463
>SPAC26F1.12c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 356
Score = 30.3 bits (65), Expect = 0.45
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 8/78 (10%)
Query: 73 FMVNQLGGEKKNKEDDSCRVFEEGQLYLKEKKEMPAHVQALIIKHLILKMKEEYLLIKRR 132
+++ L G ++ E+D +F+E QL +KK P H I+K E L++
Sbjct: 238 YLLLPLAGPEELSEEDMDGMFDELQLLPDDKKREP--------DHFIMKTLVETLVLLTA 289
Query: 133 RLEVKEGMRRESITMVDR 150
E +E MRR + + R
Sbjct: 290 TREGREHMRRRKVYPIIR 307
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 27.5 bits (58), Expect = 3.2
Identities = 28/135 (20%), Positives = 62/135 (45%), Gaps = 6/135 (4%)
Query: 11 DENYWRRNIEDAKLDEENWKVKVTIL--EAADSDNARNYLNKFEIFATEEKRFVIKSISK 68
+E +++ I+DA L K+K+T L + + + +NK +K+ +++ SK
Sbjct: 843 EETSFKKKIDDAVLANNEQKLKLTKLNFQVNELEQLEKDINKSSEDCDLQKKKLLEVSSK 902
Query: 69 --TETTFMVNQLGGEKKNKEDDSCRVFEEGQLYLKEKKEMPAHVQALIIKHLILKMKEEY 126
++ F+ N+L E + E D + ++ + + E E H L + + ++
Sbjct: 903 QGSQAPFL-NELESEYEKLEADIQEMAQKSRTEILEANEY-LHQLNEWNSELRIDVSTKF 960
Query: 127 LLIKRRRLEVKEGMR 141
IK ++ + E +R
Sbjct: 961 KCIKEKKSNIGEEVR 975
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.1 bits (57), Expect = 4.2
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 204 EWRDKVYVDDFPTDGPNLYVAITGFVEPLLP 234
EW D + + D PNL ++TGF +LP
Sbjct: 1194 EWED-TFPSVYSKDNPNLLFSMTGFEVRILP 1223
>SPAC806.08c |mod21||gamma tubulin complex subunit
Mod21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 618
Score = 27.1 bits (57), Expect = 4.2
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 264 FKAAKRGQSQTELLKEKSFKFWDDLQNLRVQKDTADVFTDTAFVVFSPP 312
FK +K Q + L+ K F FWD N V+ + D+ +++ P
Sbjct: 137 FKKSK--QPNLDFLQIKPFMFWDSSLNETVRISERSIIRDSIYMLIGYP 183
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 26.6 bits (56), Expect = 5.5
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 81 EKKNKEDDSCRVFEEGQLYLKEKKEMPAHVQALIIKHLILKMKEEYLLIKRRRLEVKE-G 139
EK+ E + R EE +L KEK+ K+L K KE+ L +RR ++ E G
Sbjct: 278 EKRLAEVEEARK-EEARLKKKEKERKKKEEMKAQGKYLSKKQKEQQALAQRRLQQMLESG 336
Query: 140 MR 141
+R
Sbjct: 337 VR 338
>SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dpb2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 594
Score = 26.2 bits (55), Expect = 7.3
Identities = 21/99 (21%), Positives = 41/99 (41%), Gaps = 3/99 (3%)
Query: 202 GEEWRDKV--YVDDFPTDGPNLYVAITGFVEPLLPGCLISIGVPITAIVQIRINPSPTAE 259
G +WR + +D+ ++ PLL L ++ VP V + T E
Sbjct: 58 GSQWRSQCEPLLDEIAKTWKRVHETQPIVTRPLLIPVLANLNVPHEVRVS-SLARVQTLE 116
Query: 260 TSGQFKAAKRGQSQTELLKEKSFKFWDDLQNLRVQKDTA 298
T+G F + + + + EK F+ D + + + D++
Sbjct: 117 TTGSFLNSSNSEIRETIKNEKYFRVLDAFKMPKFKYDSS 155
>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
Prp31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 518
Score = 26.2 bits (55), Expect = 7.3
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 119 ILKMKEEYLLIKRRRLEVKEGMRRESITMVDRSEIRGI 156
I KMKE+Y + + RRL+ + +E + + E G+
Sbjct: 383 IRKMKEQYAVTELRRLQNRVAFGKEEAEVFNFDETEGL 420
>SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 473
Score = 26.2 bits (55), Expect = 7.3
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 306 FVVFSPPYWDNEKMSGSPDKIYDEDHQDYQGHH--QEDRFLLVQESRWKNTHFLE 358
FV+ SP + + K+SG KI+ Y+G Q L ++ T FLE
Sbjct: 196 FVIISPDHANQLKLSGKISKIHPNGLISYEGEDCPQRSDGLTELDAAIAKTQFLE 250
>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1462
Score = 25.8 bits (54), Expect = 9.6
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 316 NEKMSGSPDKIYDEDHQDYQGH--HQED 341
NE++ GSP K YD Q Y H H E+
Sbjct: 1085 NEEILGSPAKDYDIHDQSYSVHELHSEN 1112
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 25.8 bits (54), Expect = 9.6
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 216 TDGPNLYVAITGFVEP--LLPGCLISIGVPITAIVQIRIN 253
T GP YV+I FV+ L PGC + + +IV + ++
Sbjct: 132 TAGPEYYVSIMSFVDKDMLEPGCSVLLHHKAMSIVGLLLD 171
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 25.8 bits (54), Expect = 9.6
Identities = 31/129 (24%), Positives = 55/129 (42%), Gaps = 4/129 (3%)
Query: 19 IEDAKLDEENWKVKVTILEAADSDNARNYLNKFEIFATEE-KRFVIKSISKTETTFMVNQ 77
++ A E ++ + L A+ AR+YLNKF T+E + + + + +VN
Sbjct: 1758 LKQACYPSEIYRASLPGLNASSEKEARDYLNKFAGNKTDELYQMLCNDPNVFDIESLVNS 1817
Query: 78 LGGEKKNKEDDSCRVFEEGQLYLKEKKEMPAHVQALIIKHLILKMKEE--YLLIKRRRLE 135
L K + S ++ LYL+ + P + I L K + E ++LI +
Sbjct: 1818 LISYPKMNIEVSQSSSDKLLLYLR-RLNQPLNPDFYIFAPLFPKPQSEGFFVLIIDSETQ 1876
Query: 136 VKEGMRRES 144
+RR S
Sbjct: 1877 ELFAIRRAS 1885
>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 207
Score = 25.8 bits (54), Expect = 9.6
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 4 KKSKDVADENYWRRNIEDAKLDEENWKVKVTILEAADSD 42
KK KD ++ W + ++ K ++E K K + A+ +
Sbjct: 23 KKKKDAEEDEKWSKGVKTNKKEQEAEKRKAALERKAERE 61
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.134 0.388
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,686,368
Number of Sequences: 5004
Number of extensions: 73047
Number of successful extensions: 195
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 188
Number of HSP's gapped (non-prelim): 15
length of query: 365
length of database: 2,362,478
effective HSP length: 74
effective length of query: 291
effective length of database: 1,992,182
effective search space: 579724962
effective search space used: 579724962
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 54 (25.8 bits)
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