Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000507-TA|BGIBMGA000507-PA|undefined
(365 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0805 + 6295448-6296264,6296362-6297479,6297565-6298467 33 0.36
07_03_1003 + 23239829-23240121,23240257-23240349,23240785-232409... 33 0.48
02_05_0473 + 29319824-29322511,29322659-29322820,29324133-293242... 32 0.83
02_05_0469 + 29297209-29297527,29297847-29297961,29298060-292982... 31 1.1
04_04_1144 + 31222556-31222633,31223238-31227665,31227724-312277... 30 3.4
03_02_0471 + 8734292-8734788,8735168-8735654,8735766-8736551 29 5.9
10_05_0068 + 8774712-8774787,8774812-8774852,8774895-8775743,877... 29 7.8
>07_01_0805 + 6295448-6296264,6296362-6297479,6297565-6298467
Length = 945
Score = 33.1 bits (72), Expect = 0.36
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 13/76 (17%)
Query: 68 KTETTFMVNQLGGEKKNKEDDSCRVFEEGQLYLKEKKEMPAHVQALIIKHLILKMKEEYL 127
K TT +V +L GEKK + EE +L +EKK++ AHV+A K + EY
Sbjct: 696 KKITTDLVRKLSGEKKE-------LSEEKKLLTEEKKKLLAHVKAFERKII------EYQ 742
Query: 128 LIKRRRLEVKEGMRRE 143
+ R+R E ++ M+ +
Sbjct: 743 DVARQRAESEDKMKEQ 758
>07_03_1003 +
23239829-23240121,23240257-23240349,23240785-23240993,
23241585-23241729,23241809-23241881,23242165-23242311,
23242411-23242536,23242653-23242712
Length = 381
Score = 32.7 bits (71), Expect = 0.48
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Query: 10 ADENYWRRNIEDAKLDEENWKVKVTILEAADSDNARNYLNKFEIFAT--EEKRFVIKSIS 67
A+ ++WR+NI L + + + +D N R F F T E+ +
Sbjct: 127 ANSDHWRKNIPVLALKNRVYAIDLIGYGYSDKPNPRELGESFYTFETWGEQLNTFCAEVI 186
Query: 68 KTETTFMVNQLGG 80
K+E F+ N +GG
Sbjct: 187 KSEAFFICNSIGG 199
>02_05_0473 + 29319824-29322511,29322659-29322820,29324133-29324249,
29324360-29324469,29324504-29324540,29324696-29324862,
29325002-29325089,29325163-29325270
Length = 1158
Score = 31.9 bits (69), Expect = 0.83
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 45 RNYLNKFEIFATEEKRFVIKSISK-TETTFMVNQLGGEKKNKEDDSCRVFEEGQLY 99
R L K E+F TE K + +++ + TF+ +G K K+D + R E ++Y
Sbjct: 975 RGLLVKLEVFRTENKGWAVRAAEPIPQGTFVCEYIGEVLKMKDDGAIRHVERLEIY 1030
>02_05_0469 +
29297209-29297527,29297847-29297961,29298060-29298255,
29298427-29298540,29298695-29298868,29299326-29299520,
29299666-29299788,29299892-29300004,29300117-29300237,
29300363-29300623,29301712-29301921
Length = 646
Score = 31.5 bits (68), Expect = 1.1
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 183 FLLPEPAEDKKYNTQLRVRGEEWRDKVYVDDFPTDGPNLY-VAITGFVEPLLPGCLISIG 241
+LLP + + + LR+R E + + +++ TD P + IT V L G L+++G
Sbjct: 277 YLLPPGEDPESCQSYLRMRNREGKYNLMFEEWVTDNPFIISPRITFEVSVRLLGGLMALG 336
Query: 242 VPITAIVQ 249
I AI++
Sbjct: 337 YTIAAILK 344
>04_04_1144 +
31222556-31222633,31223238-31227665,31227724-31227789,
31227790-31228014,31228097-31228255,31228393-31228551,
31228855-31229013,31229371-31229490,31229604-31229825
Length = 1871
Score = 29.9 bits (64), Expect = 3.4
Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 13/131 (9%)
Query: 1 MAPKKSKDVADE-NYWRRNIEDAKLDEENWKVKVTILEAADSDNARNYLNKFEIFATEEK 59
+A +++D+ +E N ++ + D E ++ KV+ L SD Y K A+ E
Sbjct: 598 VAHTRTQDLENELNTANEKFKEVEADLEQYRSKVSQL----SDELEAYQTKA---ASLEA 650
Query: 60 RFVIKSISKTETTFMVNQLGGEKKNKEDDSCRVFEEGQLYLKEKKEMPAHVQA-----LI 114
S + E + Q+ EKK E E+ + YLKEK+ + +Q+ L
Sbjct: 651 VMESASEKEKELVESLGQITEEKKKLELLVLEYEEKTEEYLKEKQSLEERLQSQESKVLA 710
Query: 115 IKHLILKMKEE 125
++ ++KM EE
Sbjct: 711 LEESLVKMGEE 721
>03_02_0471 + 8734292-8734788,8735168-8735654,8735766-8736551
Length = 589
Score = 29.1 bits (62), Expect = 5.9
Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 8/89 (8%)
Query: 48 LNKFEIFATEEKRFVIKSISKTETTFMVNQLGGEKKNKE-----DDSCRVFEEGQLYLKE 102
L++ F+T V ++ K ET F+ + + EK+N E + V E +L +
Sbjct: 147 LDRCSGFSTSSLALVARTCKKLETLFLEDSIIAEKENDEWIRELATNNSVLETLNFFLTD 206
Query: 103 KKEMPAHVQALI--IKHL-ILKMKEEYLL 128
+ PA++ L+ + L +LK+ E ++L
Sbjct: 207 LRASPAYLTLLVRNCRRLKVLKISECFML 235
>10_05_0068 +
8774712-8774787,8774812-8774852,8774895-8775743,
8776210-8776582,8776814-8777484
Length = 669
Score = 28.7 bits (61), Expect = 7.8
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 44 ARNYLNKFEIFATEEKRFVIKSISKTETTFMVNQLGGEKKNKEDDSCRVFEEGQLYLKEK 103
ARN L +I + + S ++ + +F V++L N DD R E YLK
Sbjct: 560 ARNQLEYSQIIGS---LMYLASATRLDISFAVSKLSRFTSNPGDDHWRALERVMRYLKGT 616
Query: 104 KEMPAH 109
E+ H
Sbjct: 617 MELGLH 622
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.134 0.388
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,264,727
Number of Sequences: 37544
Number of extensions: 420980
Number of successful extensions: 976
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 975
Number of HSP's gapped (non-prelim): 8
length of query: 365
length of database: 14,793,348
effective HSP length: 83
effective length of query: 282
effective length of database: 11,677,196
effective search space: 3292969272
effective search space used: 3292969272
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 61 (28.7 bits)
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