GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000506-TA|BGIBMGA000506-
PA|IPR003140|Phospholipase/Carboxylesterase
         (126 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr 1||...    31   0.073
SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein 4...    25   2.7  
SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr 2...    25   4.8  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    25   4.8  
SPAC343.12 |rds1||conserved fungal protein|Schizosaccharomyces p...    24   6.3  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    24   6.3  
SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy...    24   6.3  
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |...    24   6.3  
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac...    24   6.3  

>SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 224

 Score = 30.7 bits (66), Expect = 0.073
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 15  GFSMGGALAFHTGYRWDRKLAGVFAFSSFLNYNSAVYDELKNNTGVTYPPLLQIHGNQDD 74
           GFS G  ++ + G  + ++LAG+   S FL   S     L         P+L  +  +D 
Sbjct: 114 GFSQGCMVSLYAGLTYPKRLAGIMGHSGFLPLASKFPSALSRVAKEI--PILLTYMTEDP 171

Query: 75  LVP 77
           +VP
Sbjct: 172 IVP 174


>SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein
           4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 8/22 (36%), Positives = 15/22 (68%)

Query: 32  RKLAGVFAFSSFLNYNSAVYDE 53
           RK   +F   ++LN+N+ +Y+E
Sbjct: 326 RKKGAIFPIHAYLNFNAKLYEE 347


>SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 439

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 8/14 (57%), Positives = 11/14 (78%)

Query: 78  LKWGEETYQKLKSL 91
           ++WG ETY  LKS+
Sbjct: 183 MRWGAETYHTLKSI 196


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 9/38 (23%), Positives = 22/38 (57%)

Query: 39  AFSSFLNYNSAVYDELKNNTGVTYPPLLQIHGNQDDLV 76
           A++++ ++ +A++D+   N  +   P L   GN+ + V
Sbjct: 113 AYTTYSSFPNALFDDFSPNNPLDTDPFLTSPGNKQNTV 150


>SPAC343.12 |rds1||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 402

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 13/38 (34%), Positives = 19/38 (50%)

Query: 39  AFSSFLNYNSAVYDELKNNTGVTYPPLLQIHGNQDDLV 76
           A+ S LN   A  +   NN+GVTY P   ++ +    V
Sbjct: 327 AWISQLNVTYAPLNITGNNSGVTYQPSSHLYNDSTQQV 364


>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 10/22 (45%), Positives = 15/22 (68%)

Query: 29  RWDRKLAGVFAFSSFLNYNSAV 50
           RW + + GVF+F+S  N N A+
Sbjct: 592 RWFQSVIGVFSFASRENSNRAL 613


>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 79  KWGEETYQKLKSLGIQGSFFVQERLGHSLNRRGIKIIKDWIDEKLPNS 126
           +W +  Y+K     + G+ +     G S + +GI + K  ++ K PNS
Sbjct: 21  RWADAHYKKR----LLGTAYKSSPFGGSSHAKGIVVEKIGVEAKQPNS 64


>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 6/84 (7%)

Query: 47  NSAVYDELKNNTGVTYPPLLQIHGNQDDLVPLKWGEETYQKLKSLGIQ--GSFFVQER-- 102
           N    + + + T V+ P    +  N DDL+ L + E   ++LK +  Q      +Q+   
Sbjct: 165 NETTSEAITDLTTVSSPQQQSLLENDDDLIQLGFMEFRPEELKEVLAQVLQEIPLQDYRV 224

Query: 103 --LGHSLNRRGIKIIKDWIDEKLP 124
             LG   N     II  W+ E LP
Sbjct: 225 PILGTYPNTCSGNIIVSWLQENLP 248


>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 79  KWGEETYQKLKSLGIQGSFFVQERLGHSLNRRGIKIIKDWIDEKLPNS 126
           +W +  Y+K     + G+ +     G S + +GI + K  ++ K PNS
Sbjct: 21  RWADAHYKKR----LLGTAYKSSPFGGSSHAKGIVVEKIGVEAKQPNS 64


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.139    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 635,861
Number of Sequences: 5004
Number of extensions: 25801
Number of successful extensions: 54
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 48
Number of HSP's gapped (non-prelim): 9
length of query: 126
length of database: 2,362,478
effective HSP length: 65
effective length of query: 61
effective length of database: 2,037,218
effective search space: 124270298
effective search space used: 124270298
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 49 (23.8 bits)