GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000506-TA|BGIBMGA000506-
PA|IPR003140|Phospholipase/Carboxylesterase
         (126 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51329| Best HMM Match : Abhydrolase_2 (HMM E-Value=4.6e-18)         67   5e-12
SB_7663| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   4.6  
SB_37539| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.1  

>SB_51329| Best HMM Match : Abhydrolase_2 (HMM E-Value=4.6e-18)
          Length = 244

 Score = 66.9 bits (156), Expect = 5e-12
 Identities = 38/115 (33%), Positives = 55/115 (47%), Gaps = 4/115 (3%)

Query: 15  GFSMGGALAFHTGYRWDRKLAGVFAFSSFLNYNSAVYDELKNN----TGVTYPPLLQIHG 70
           G  MG  +A H  YR+   +AGVF  S+ L   S VY  L +     +   +PPLL  HG
Sbjct: 119 GCDMGAQIAMHVAYRYLPDVAGVFGLSTHLGPLSHVYKVLLHKRVTQSDFEWPPLLLCHG 178

Query: 71  NQDDLVPLKWGEETYQKLKSLGIQGSFFVQERLGHSLNRRGIKIIKDWIDEKLPN 125
           + D  V LKW   T +    L ++    V     H L+   +  +K+WI + LP+
Sbjct: 179 HDDKRVNLKWAAHTAEYFMDLNVETELQVYYGQNHELSVHQVNHLKEWIIKTLPD 233


>SB_7663| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 134

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 14  SGFSMGGALAFHTGYRWDRKLAGVFAFSSFLNYNSAVYDELKNNTGV 60
           SGFS GG  AF   Y   ++ AG+  F+ +    +  Y ++ +  G+
Sbjct: 76  SGFSDGGTGAFRFFYNTPKQYAGLLLFNGYPQLGN-YYKKVNHQNGM 121


>SB_37539| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 942

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 6/62 (9%)

Query: 23  AFHTGYRWDRKLAGVFAFSSFLNYNSAVYDEL------KNNTGVTYPPLLQIHGNQDDLV 76
           A HTG  W+R +  +      L  N  V DE+      +    +   PL +I  + +DL 
Sbjct: 823 ASHTGRLWERMIGSIRRILRVLLANQTVDDEILSTMMAETENILNDRPLTRITADPNDLE 882

Query: 77  PL 78
           PL
Sbjct: 883 PL 884


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.139    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,388,663
Number of Sequences: 59808
Number of extensions: 161059
Number of successful extensions: 259
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 256
Number of HSP's gapped (non-prelim): 3
length of query: 126
length of database: 16,821,457
effective HSP length: 74
effective length of query: 52
effective length of database: 12,395,665
effective search space: 644574580
effective search space used: 644574580
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 55 (26.2 bits)