GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000506-TA|BGIBMGA000506-
PA|IPR003140|Phospholipase/Carboxylesterase
         (126 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    21   3.2  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    21   3.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   5.6  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    20   7.3  

>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 3.2
 Identities = 9/32 (28%), Positives = 16/32 (50%)

Query: 34  LAGVFAFSSFLNYNSAVYDELKNNTGVTYPPL 65
           L+  + +S++ NYN+   +   NN    Y  L
Sbjct: 85  LSNNYKYSNYNNYNNNYNNNYNNNYNNNYKKL 116


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 3.2
 Identities = 9/32 (28%), Positives = 16/32 (50%)

Query: 34  LAGVFAFSSFLNYNSAVYDELKNNTGVTYPPL 65
           L+  + +S++ NYN+   +   NN    Y  L
Sbjct: 85  LSNNYKYSNYNNYNNNYNNNYNNNYNNNYKKL 116


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 7/32 (21%), Positives = 18/32 (56%)

Query: 45  NYNSAVYDELKNNTGVTYPPLLQIHGNQDDLV 76
           +YN   Y+E       + PP+  ++G+ ++++
Sbjct: 541 SYNQLNYNENIERFFKSKPPVATMYGSDEEII 572


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
          dehydrogenase/reductase protein.
          Length = 246

 Score = 20.2 bits (40), Expect = 7.3
 Identities = 9/32 (28%), Positives = 15/32 (46%)

Query: 52 DELKNNTGVTYPPLLQIHGNQDDLVPLKWGEE 83
          +ELK+  G   P    +    D L  ++W E+
Sbjct: 49 EELKSKPGKLVPLQCDLSNQNDILKVIEWVEK 80


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.139    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,799
Number of Sequences: 429
Number of extensions: 1741
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 126
length of database: 140,377
effective HSP length: 51
effective length of query: 75
effective length of database: 118,498
effective search space:  8887350
effective search space used:  8887350
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)
S2: 39 (19.8 bits)