Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000505-TA|BGIBMGA000505-PA|undefined
         (120 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55980| Best HMM Match : rve (HMM E-Value=3.8e-23)                   28   2.3  
SB_6911| Best HMM Match : Ank (HMM E-Value=0)                          27   5.4  
SB_16011| Best HMM Match : Sugar_tr (HMM E-Value=0)                    26   7.2  
SB_30479| Best HMM Match : WD40 (HMM E-Value=1.1e-06)                  26   7.2  
SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.5  
SB_36857| Best HMM Match : zf-C3HC4 (HMM E-Value=2.8e-05)              26   9.5  

>SB_55980| Best HMM Match : rve (HMM E-Value=3.8e-23)
          Length = 1268

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 17  DFDTRRLTLGQNKKKDLFSQTLYKR-KYFCPDQYDEGY 53
           +F  RRL  G    +D+F + ++KR K  C ++ ++ Y
Sbjct: 553 NFRPRRLVFGAKSSQDVFDKAMFKRQKAPCAEKVEKRY 590


>SB_6911| Best HMM Match : Ank (HMM E-Value=0)
          Length = 1961

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 16/53 (30%), Positives = 25/53 (47%)

Query: 61   GKKPPNGATWYTICGTPFTNRAEYIVLLTTILFLAAGVFYGLYFRTIQSVPVP 113
            GK P   + WY I   P+ N  E  ++    + LA+     L  + I++ PVP
Sbjct: 1536 GKSPLLLSVWYAIKYRPYLNLHEPSLITNLEIKLASHTAKFLLTKMIKTKPVP 1588


>SB_16011| Best HMM Match : Sugar_tr (HMM E-Value=0)
          Length = 512

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 90  TILFLAAGVFYGLYFRTIQSVPVPT 114
           T+  +A G ++ LY  T Q  P PT
Sbjct: 354 TVSLIALGFYFELYIPTTQEQPTPT 378


>SB_30479| Best HMM Match : WD40 (HMM E-Value=1.1e-06)
          Length = 1160

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 12/39 (30%), Positives = 23/39 (58%)

Query: 2   PSSFKDGTAVMLYNYDFDTRRLTLGQNKKKDLFSQTLYK 40
           PS +K+  ++ L N+DF+TRR +       +L   ++Y+
Sbjct: 220 PSCWKEVASLDLENFDFETRRRSKSDVTTINLPGSSVYR 258


>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5222

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)

Query: 58   CVGGKKPPNGATWYTICGTPF 78
            C GG   PNG+  YT C  P+
Sbjct: 3033 CPGGHYCPNGSDTYTPCEYPY 3053


>SB_36857| Best HMM Match : zf-C3HC4 (HMM E-Value=2.8e-05)
          Length = 576

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 5/64 (7%)

Query: 11  VMLYNYDFDTRRLTLGQNKKKDLFSQTL-----YKRKYFCPDQYDEGYFDFHCVGGKKPP 65
           +++Y  +F ++R   G    + + S        Y  K++ PD   +  F FH  G    P
Sbjct: 440 ILVYCKNFKSKRFRFGFRFGQGILSSDCGRVEYYNNKFYVPDYGSDRIFIFHLNGDFAGP 499

Query: 66  NGAT 69
            G T
Sbjct: 500 WGMT 503


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.324    0.141    0.447 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,560,788
Number of Sequences: 59808
Number of extensions: 190114
Number of successful extensions: 258
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 253
Number of HSP's gapped (non-prelim): 6
length of query: 120
length of database: 16,821,457
effective HSP length: 74
effective length of query: 46
effective length of database: 12,395,665
effective search space: 570200590
effective search space used: 570200590
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 54 (25.8 bits)