Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000505-TA|BGIBMGA000505-PA|undefined
         (120 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    25   0.31 
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    24   0.55 
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   3.9  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   5.1  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   5.1  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   5.1  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       20   8.9  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 24.6 bits (51), Expect = 0.31
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 77  PFTNRAEYIVLLTTILF-LAAGVFYGLYFRTIQSVPVPTKKQK 118
           PFT    Y++  +TI F L   V    Y++  ++  + TK  K
Sbjct: 199 PFTEHLGYLIFSSTISFYLPLFVMVFTYYKIYRAAVIQTKSLK 241


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 23.8 bits (49), Expect = 0.55
 Identities = 10/27 (37%), Positives = 17/27 (62%)

Query: 75  GTPFTNRAEYIVLLTTILFLAAGVFYG 101
           GT +  RA+++++L  IL   A  +YG
Sbjct: 366 GTRYPGRADHMIMLEMILPGVAVTYYG 392


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.0 bits (42), Expect = 3.9
 Identities = 8/20 (40%), Positives = 14/20 (70%)

Query: 83  EYIVLLTTILFLAAGVFYGL 102
           + ++++ TIL   +GVFY L
Sbjct: 320 DVLIIIYTILTYMSGVFYYL 339


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 20.6 bits (41), Expect = 5.1
 Identities = 10/18 (55%), Positives = 12/18 (66%)

Query: 94  LAAGVFYGLYFRTIQSVP 111
           LAA V+ G Y R  QS+P
Sbjct: 66  LAAKVWNGQYARVQQSMP 83


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 20.6 bits (41), Expect = 5.1
 Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 1/28 (3%)

Query: 51  EGYFDFHCVG-GKKPPNGATWYTICGTP 77
           +GY      G  K+  +G   +T CGTP
Sbjct: 502 QGYVKLVDFGFAKRLDHGRKTWTFCGTP 529


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.6 bits (41), Expect = 5.1
 Identities = 5/15 (33%), Positives = 9/15 (60%)

Query: 59  VGGKKPPNGATWYTI 73
           +GG + P    W+T+
Sbjct: 881 IGGLQHPGAVVWFTV 895


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 8/22 (36%), Positives = 12/22 (54%)

Query: 17  DFDTRRLTLGQNKKKDLFSQTL 38
           D +     + +NKKKDL  + L
Sbjct: 421 DVEQNFYEVARNKKKDLLKEIL 442


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.324    0.141    0.447 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,102
Number of Sequences: 429
Number of extensions: 1730
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 120
length of database: 140,377
effective HSP length: 51
effective length of query: 69
effective length of database: 118,498
effective search space:  8176362
effective search space used:  8176362
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (21.1 bits)
S2: 39 (19.8 bits)