Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000505-TA|BGIBMGA000505-PA|undefined
         (120 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g23570.1 68418.m02765 XS domain-containing protein / XS zinc ...    28   1.9  
At2g14520.1 68415.m01625 CBS domain-containing protein contains ...    26   5.9  
At3g46980.1 68416.m05101 transporter-related low similarity to b...    26   7.8  

>At5g23570.1 68418.m02765 XS domain-containing protein / XS zinc
           finger domain-containing protein-related contains Pfam
           profiles PF03468: XS domain, weak hit to PF03470: XS
           zinc finger domain
          Length = 625

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 13/59 (22%), Positives = 23/59 (38%)

Query: 15  NYDFDTRRLTLGQNKKKDLFSQTLYKRKYFCPDQYDEGYFDFHCVGGKKPPNGATWYTI 73
           +YD D  + + G  K+   F +          +Q +E    +HC   +  P    WY +
Sbjct: 185 DYDSDVSQKSHGSRKQNKWFKKFFGSLDSLSIEQINEPQRQWHCPACQNGPGAIDWYNL 243


>At2g14520.1 68415.m01625 CBS domain-containing protein contains
           Pfam profiles PF00571: CBS domain, PF01595: Domain of
           unknown function
          Length = 423

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 16/48 (33%), Positives = 21/48 (43%)

Query: 68  ATWYTICGTPFTNRAEYIVLLTTILFLAAGVFYGLYFRTIQSVPVPTK 115
           A  Y  CGT F      IVLL     L +G+  GL   ++  + V  K
Sbjct: 2   AVEYECCGTSFFIHIAVIVLLVLFAGLMSGLTLGLMSMSLVDLEVLAK 49


>At3g46980.1 68416.m05101 transporter-related low similarity to
           brain specific Na+-dependent inorganic phosphate
           cotransporter from [Rattus norvegicus] GI:507415, [Homo
           sapiens] GI:7328925, vesicular glutamate transporter 3
           from [Rattus norvegicus] GI:21685382; contains Pfam
           profile PF00083: major facilitator superfamily protein
          Length = 533

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 9/18 (50%), Positives = 14/18 (77%)

Query: 86  VLLTTILFLAAGVFYGLY 103
           +LLT IL+L + +FY +Y
Sbjct: 504 ILLTAILYLLSALFYNIY 521


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.324    0.141    0.447 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,223,558
Number of Sequences: 28952
Number of extensions: 133374
Number of successful extensions: 179
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 176
Number of HSP's gapped (non-prelim): 3
length of query: 120
length of database: 12,070,560
effective HSP length: 73
effective length of query: 47
effective length of database: 9,957,064
effective search space: 467982008
effective search space used: 467982008
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 54 (25.8 bits)