GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000505-TA|BGIBMGA000505-PA|undefined
         (120 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces po...    29   0.20 
SPAC1687.17c |||Der1-like |Schizosaccharomyces pombe|chr 1|||Manual    24   5.7  
SPCC417.11c |||glutamate-1-semialdehyde 2,1-aminomutaseaminotran...    24   7.5  
SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces pom...    24   7.5  

>SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 29.1 bits (62), Expect = 0.20
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)

Query: 28  NKKKDLFSQTLYKRKYFCPD-QYDEGYFDFHCVGGKKPPNGATWY 71
           N+K     Q  Y +   C +   +  +F   CVG K PP G TWY
Sbjct: 227 NEKYCFCQQGSYGQMVACDNANCEREWFHMECVGLKAPPEG-TWY 270


>SPAC1687.17c |||Der1-like |Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 168

 Score = 24.2 bits (50), Expect = 5.7
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)

Query: 64 PPNGATWYTICGTPFTNRAEYIVLLTTILFL 94
          PP   T Y + GT FT  A Y   +TT L++
Sbjct: 12 PP--VTRYIVLGTLFTTLAVYWRAITTFLYV 40


>SPCC417.11c |||glutamate-1-semialdehyde
          2,1-aminomutaseaminotransferase |Schizosaccharomyces
          pombe|chr 3|||Manual
          Length = 435

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 10/24 (41%), Positives = 11/24 (45%)

Query: 55 DFHCVGGKKPPNGATWYTICGTPF 78
          DFHC      P G T   + G PF
Sbjct: 28 DFHCKACDSLPGGNTRTVLHGAPF 51


>SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 9/20 (45%), Positives = 10/20 (50%)

Query: 61  GKKPPNGATWYTICGTPFTN 80
           G  PP    WY  C T FT+
Sbjct: 280 GHIPPTRGQWYEDCYTSFTD 299


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.324    0.141    0.447 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 642,027
Number of Sequences: 5004
Number of extensions: 27085
Number of successful extensions: 45
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 41
Number of HSP's gapped (non-prelim): 4
length of query: 120
length of database: 2,362,478
effective HSP length: 65
effective length of query: 55
effective length of database: 2,037,218
effective search space: 112046990
effective search space used: 112046990
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 48 (23.4 bits)