GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000505-TA|BGIBMGA000505-PA|undefined
         (120 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1445 - 33658355-33658417,33658536-33658669,33659056-336591...    28   2.3  
12_01_0611 - 5034481-5034709,5034863-5035020,5035231-5035475,503...    27   5.4  
08_01_0692 + 6121443-6122266,6122812-6124798                           27   5.4  
07_03_0203 + 15138864-15140452,15140629-15140726,15141924-151422...    27   5.4  
12_02_0318 - 17457182-17462232,17462745-17462955,17463356-174634...    26   7.1  
07_03_0876 - 22215688-22215789,22216051-22216206,22217227-222172...    26   7.1  
07_01_0705 - 5313315-5315219,5315858-5315860                           26   9.4  

>04_04_1445 -
           33658355-33658417,33658536-33658669,33659056-33659116,
           33659197-33659356,33660032-33660081,33662237-33662290,
           33662630-33662704,33662821-33662949,33663065-33663152,
           33663266-33663372,33663513-33663561,33663657-33663760,
           33663941-33663980,33664409-33664659,33664674-33664686,
           33665846-33666355,33666437-33667657,33667973-33668221,
           33668305-33668531
          Length = 1194

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 4   SFKDGTAVMLYNYDFDTRRLTLGQNKKKDLFSQ-TLYKRKYFCPDQYD--EGYFDFHCV 59
           +FK+G +V L   +F + ++    +   DLF Q ++    YF P +      ++D HCV
Sbjct: 415 AFKNGFSVALRGMEFRSEKIAAIASAVADLFGQPSVGANIYFSPPRAQGLARHYDDHCV 473


>12_01_0611 -
           5034481-5034709,5034863-5035020,5035231-5035475,
           5036686-5036983,5037644-5038482,5039763-5039823
          Length = 609

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 14/57 (24%), Positives = 20/57 (35%)

Query: 15  NYDFDTRRLTLGQNKKKDLFSQTLYKRKYFCPDQYDEGYFDFHCVGGKKPPNGATWY 71
           +YD D    +    K   LF       +    +Q +E    +HC   K  P    WY
Sbjct: 164 DYDSDASEKSFETRKNHKLFKGFFEVLEALSVEQLNEPTRQWHCPACKNGPGAIDWY 220


>08_01_0692 + 6121443-6122266,6122812-6124798
          Length = 936

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 12/37 (32%), Positives = 18/37 (48%)

Query: 15  NYDFDTRRLTLGQNKKKDLFSQTLYKRKYFCPDQYDE 51
           N+ +  R   L     K LF + + + K  CP QY+E
Sbjct: 321 NHQYIHRMKPLNSEDSKRLFFKRVIRSKDGCPSQYEE 357


>07_03_0203 +
           15138864-15140452,15140629-15140726,15141924-15142235,
           15142437-15142749,15144025-15146023,15147033-15147068
          Length = 1448

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 13/45 (28%), Positives = 19/45 (42%)

Query: 8   GTAVMLYNYDFDTRRLTLGQNKKKDLFSQTLYKRKYFCPDQYDEG 52
           G A   Y  DF  +   L     + LF   ++  K  CP+  +EG
Sbjct: 811 GRACCAYQADFIYKMQCLNAKDSETLFFSRIFGSKDQCPENLEEG 855


>12_02_0318 -
           17457182-17462232,17462745-17462955,17463356-17463403,
           17466161-17466346
          Length = 1831

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 64  PPNGATWYTICGTPFTNRAEYIVLLTTILFLAAGVFYGLY 103
           P  G+ W+T+ GT      +YI L     ++++G + G Y
Sbjct: 715 PAEGSNWFTLIGTNPWRSQKYIDLSAD--YMSSGTYAGNY 752


>07_03_0876 -
          22215688-22215789,22216051-22216206,22217227-22217247,
          22217311-22217580,22217793-22219178,22220562-22220621
          Length = 664

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 9/34 (26%), Positives = 21/34 (61%)

Query: 11 VMLYNYDFDTRRLTLGQNKKKDLFSQTLYKRKYF 44
          ++++ + F +R L +G N++   FSQ  ++  Y+
Sbjct: 34 ILMFCFTFVSRLLAVGTNRRAAYFSQPSHRSGYY 67


>07_01_0705 - 5313315-5315219,5315858-5315860
          Length = 635

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 11/35 (31%), Positives = 19/35 (54%)

Query: 17 DFDTRRLTLGQNKKKDLFSQTLYKRKYFCPDQYDE 51
          D+  R   LG    K+LF   ++  +  CP+Q++E
Sbjct: 37 DYIHRIKPLGSEDAKELFVNRVFGPQKDCPEQFEE 71


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.324    0.141    0.447 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,868,688
Number of Sequences: 37544
Number of extensions: 154763
Number of successful extensions: 182
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 177
Number of HSP's gapped (non-prelim): 7
length of query: 120
length of database: 14,793,348
effective HSP length: 73
effective length of query: 47
effective length of database: 12,052,636
effective search space: 566473892
effective search space used: 566473892
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 54 (25.8 bits)