GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000505-TA|BGIBMGA000505-PA|undefined
         (120 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-4324|AAN14153.1|  796|Drosophila melanogaster CG11880-P...    29   2.2  
AE014297-4323|AAN14152.1|  796|Drosophila melanogaster CG11880-P...    29   2.2  
AE014297-4322|AAF56859.1|  796|Drosophila melanogaster CG11880-P...    29   2.2  
BT028812-1|ABI34193.2|  331|Drosophila melanogaster RT01008p pro...    27   5.0  
AE014134-442|AAF51228.1|  331|Drosophila melanogaster CG9879-PA ...    27   5.0  

>AE014297-4324|AAN14153.1|  796|Drosophila melanogaster CG11880-PC,
           isoform C protein.
          Length = 796

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 4/47 (8%)

Query: 68  ATWYTICGTPFTNRAEYIVLLTTIL----FLAAGVFYGLYFRTIQSV 110
           +T+Y +   P   R  YI + TT++    FL   VF+G+Y   + ++
Sbjct: 707 STYYFLDNNPSIIRLNYIAVPTTVVVIAAFLITSVFFGVYSTAVDTL 753


>AE014297-4323|AAN14152.1|  796|Drosophila melanogaster CG11880-PB,
           isoform B protein.
          Length = 796

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 4/47 (8%)

Query: 68  ATWYTICGTPFTNRAEYIVLLTTIL----FLAAGVFYGLYFRTIQSV 110
           +T+Y +   P   R  YI + TT++    FL   VF+G+Y   + ++
Sbjct: 707 STYYFLDNNPSIIRLNYIAVPTTVVVIAAFLITSVFFGVYSTAVDTL 753


>AE014297-4322|AAF56859.1|  796|Drosophila melanogaster CG11880-PA,
           isoform A protein.
          Length = 796

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 4/47 (8%)

Query: 68  ATWYTICGTPFTNRAEYIVLLTTIL----FLAAGVFYGLYFRTIQSV 110
           +T+Y +   P   R  YI + TT++    FL   VF+G+Y   + ++
Sbjct: 707 STYYFLDNNPSIIRLNYIAVPTTVVVIAAFLITSVFFGVYSTAVDTL 753


>BT028812-1|ABI34193.2|  331|Drosophila melanogaster RT01008p
          protein.
          Length = 331

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 13/53 (24%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 6  KDGTAVMLYNYD--FDTRRLTLGQNKKKDLFSQTLYKRKYFCPDQYDEGYFDF 56
          K+GT+  L + D  F+  +++   + K+DL ++ +    Y   D +++   DF
Sbjct: 30 KEGTSAKLSSLDKLFEELKISKESSAKEDLVTEPMKTESYLYKDYFNKSPIDF 82


>AE014134-442|AAF51228.1|  331|Drosophila melanogaster CG9879-PA
          protein.
          Length = 331

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 13/53 (24%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 6  KDGTAVMLYNYD--FDTRRLTLGQNKKKDLFSQTLYKRKYFCPDQYDEGYFDF 56
          K+GT+  L + D  F+  +++   + K+DL ++ +    Y   D +++   DF
Sbjct: 30 KEGTSAKLSSLDKLFEELKISKESSAKEDLVTEPMKTESYLYKDYFNKSPIDF 82


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.324    0.141    0.447 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,680,391
Number of Sequences: 52641
Number of extensions: 279799
Number of successful extensions: 427
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 427
Number of HSP's gapped (non-prelim): 5
length of query: 120
length of database: 24,830,863
effective HSP length: 76
effective length of query: 44
effective length of database: 20,830,147
effective search space: 916526468
effective search space used: 916526468
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 56 (26.6 bits)