GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000505-TA|BGIBMGA000505-PA|undefined
         (120 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z37140-2|CAA85502.1|  452|Caenorhabditis elegans Hypothetical pr...    72   1e-13
U39997-6|AAN60517.1|  942|Caenorhabditis elegans Clear protein 1...    30   0.51 
U39997-5|AAN60515.1| 1409|Caenorhabditis elegans Clear protein 1...    30   0.51 
U39997-4|AAN60516.1| 1444|Caenorhabditis elegans Clear protein 1...    30   0.51 
AF047881-1|AAC27552.1|  942|Caenorhabditis elegans truncated CLR...    30   0.51 
AF047880-1|AAC27551.1| 1409|Caenorhabditis elegans CLR-1 protein.      30   0.51 
Z68507-5|CAA92827.2|   90|Caenorhabditis elegans Hypothetical pr...    28   1.5  
U80025-2|AAD32270.3|  806|Caenorhabditis elegans Hypothetical pr...    26   6.2  

>Z37140-2|CAA85502.1|  452|Caenorhabditis elegans Hypothetical
           protein ZK899.2 protein.
          Length = 452

 Score = 72.1 bits (169), Expect = 1e-13
 Identities = 32/68 (47%), Positives = 43/68 (63%), Gaps = 5/68 (7%)

Query: 38  LYKRKYFCPDQYDEGYFDFHCVGG---KKPPNGA--TWYTICGTPFTNRAEYIVLLTTIL 92
           L K+KYFC D YDE Y DFHCV G   ++P  G    WY +CGT + NRAEY+ ++  I 
Sbjct: 352 LQKQKYFCTDNYDEKYIDFHCVPGGPPQQPEPGVPLEWYAVCGTDYENRAEYVFIIWFIC 411

Query: 93  FLAAGVFY 100
            L + ++Y
Sbjct: 412 ILYSCIWY 419


>U39997-6|AAN60517.1|  942|Caenorhabditis elegans Clear protein 1,
           isoform c protein.
          Length = 942

 Score = 29.9 bits (64), Expect = 0.51
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 6/53 (11%)

Query: 14  YNYDFDTRRLTLGQN--KKKDLFSQTLYKRKYFCPDQYDEGYFDFHCVGGKKP 64
           YNY   +  L +  +   K D+   T Y RK  CP Q+D    D H    +KP
Sbjct: 102 YNYRTPSTCLLMDADYRSKYDVKEPTCYSRKCVCPPQFD----DVHVTANQKP 150


>U39997-5|AAN60515.1| 1409|Caenorhabditis elegans Clear protein 1,
           isoform a protein.
          Length = 1409

 Score = 29.9 bits (64), Expect = 0.51
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 6/53 (11%)

Query: 14  YNYDFDTRRLTLGQN--KKKDLFSQTLYKRKYFCPDQYDEGYFDFHCVGGKKP 64
           YNY   +  L +  +   K D+   T Y RK  CP Q+D    D H    +KP
Sbjct: 102 YNYRTPSTCLLMDADYRSKYDVKEPTCYSRKCVCPPQFD----DVHVTANQKP 150


>U39997-4|AAN60516.1| 1444|Caenorhabditis elegans Clear protein 1,
           isoform b protein.
          Length = 1444

 Score = 29.9 bits (64), Expect = 0.51
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 6/53 (11%)

Query: 14  YNYDFDTRRLTLGQN--KKKDLFSQTLYKRKYFCPDQYDEGYFDFHCVGGKKP 64
           YNY   +  L +  +   K D+   T Y RK  CP Q+D    D H    +KP
Sbjct: 102 YNYRTPSTCLLMDADYRSKYDVKEPTCYSRKCVCPPQFD----DVHVTANQKP 150


>AF047881-1|AAC27552.1|  942|Caenorhabditis elegans truncated CLR-1
           protein.
          Length = 942

 Score = 29.9 bits (64), Expect = 0.51
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 6/53 (11%)

Query: 14  YNYDFDTRRLTLGQN--KKKDLFSQTLYKRKYFCPDQYDEGYFDFHCVGGKKP 64
           YNY   +  L +  +   K D+   T Y RK  CP Q+D    D H    +KP
Sbjct: 102 YNYRTPSTCLLMDADYRSKYDVKEPTCYSRKCVCPPQFD----DVHVTANQKP 150


>AF047880-1|AAC27551.1| 1409|Caenorhabditis elegans CLR-1 protein.
          Length = 1409

 Score = 29.9 bits (64), Expect = 0.51
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 6/53 (11%)

Query: 14  YNYDFDTRRLTLGQN--KKKDLFSQTLYKRKYFCPDQYDEGYFDFHCVGGKKP 64
           YNY   +  L +  +   K D+   T Y RK  CP Q+D    D H    +KP
Sbjct: 102 YNYRTPSTCLLMDADYRSKYDVKEPTCYSRKCVCPPQFD----DVHVTANQKP 150


>Z68507-5|CAA92827.2|   90|Caenorhabditis elegans Hypothetical
          protein M18.2 protein.
          Length = 90

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)

Query: 67 GATWYTICGTPFTNRAEY 84
          GATW+ ICG  F +R  Y
Sbjct: 51 GATWHVICGKCFGSRVSY 68


>U80025-2|AAD32270.3|  806|Caenorhabditis elegans Hypothetical
           protein F02C9.2 protein.
          Length = 806

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 2/28 (7%)

Query: 34  FSQTLYKRKYFC--PDQYDEGYFDFHCV 59
           F+ TL+   Y    P + ++GYF +HCV
Sbjct: 549 FTPTLFPINYIHMNPAEIEKGYFAYHCV 576


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.324    0.141    0.447 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,513,361
Number of Sequences: 27539
Number of extensions: 151766
Number of successful extensions: 269
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 261
Number of HSP's gapped (non-prelim): 8
length of query: 120
length of database: 12,573,161
effective HSP length: 73
effective length of query: 47
effective length of database: 10,562,814
effective search space: 496452258
effective search space used: 496452258
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 54 (25.8 bits)