GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000504-TA|BGIBMGA000504-PA|undefined
         (340 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    30   0.41 
SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase...    28   1.7  
SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces pom...    28   2.2  
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||...    27   2.9  
SPCC11E10.04 |||mitochondrial ATPase expression protein homolog|...    27   5.1  
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    26   6.7  
SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces po...    26   6.7  
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo...    26   8.9  

>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 30.3 bits (65), Expect = 0.41
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 193 WYAP-KVGQWASAGKKVEWKTLILATILGMPGGVLLF 228
           +Y P K     +AGK+  W+TL+L+ + G  G   LF
Sbjct: 526 YYLPNKEANTYNAGKEASWETLLLSVVRGKSGIAFLF 562


>SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4
           desaturase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 362

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 5/89 (5%)

Query: 58  YFWLGTVLHGIYADNFWHFVLPEYDNFWHSQTPIIFLGARLPLHIILLYPA---FIYHAA 114
           YF++ + L G       HF L E+ N   ++      G   PL     Y     F+Y+A 
Sbjct: 230 YFFMSSFLAGSLHPTAGHF-LSEHYNMTRTRLIASGPGKETPLETFSYYGPLNFFVYNAG 288

Query: 115 YAVSKLNFPRYAEPFAVGLVTVLIDIPYD 143
           Y +   +FP Y     +G V  L    YD
Sbjct: 289 YHIEHHDFP-YVAWTRIGKVRELAPEFYD 316


>SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 266

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 4/61 (6%)

Query: 32  IISQAVYVLAGLLTLFHAFKKGGRWPYFWLGTVLHGIYADNFWHFVLPEYDNFWHSQTPI 91
           II +AV++  G+     AF    +W +  LG    G    + W  +L     F+   TP 
Sbjct: 147 IILEAVFITLGVFVALTAFTFQSKWDFSRLG----GFLYVSLWSLILTPLIFFFVPSTPF 202

Query: 92  I 92
           I
Sbjct: 203 I 203


>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 408

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 4/63 (6%)

Query: 201 WASAGKKVEWKTLILATILGMPGGVLLFVPIYHPLHDIYKIHSEITFFLLFAIYGTFVIH 260
           +AS G    +   +  T+   P  +LLF P Y  L    K +S I F  +F ++  F + 
Sbjct: 161 FASCGSYAIYACCMALTVFINPNALLLFFPSYLILR---KCNSSIKFRQIFVVF-LFYLA 216

Query: 261 GLL 263
           GL+
Sbjct: 217 GLI 219


>SPCC11E10.04 |||mitochondrial ATPase expression protein
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 443

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 15/47 (31%), Positives = 21/47 (44%)

Query: 246 TFFLLFAIYGTFVIHGLLSDREKSKEKLTLIDYILILQLALHYVIYW 292
           T   +F+I       G +S       KLT +  I   +LA  Y+IYW
Sbjct: 268 THHTVFSIISALGYLGDVSSAVSLSRKLTSVYKINFPELAWRYIIYW 314


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)

Query: 59  FWLGTVLHGIYADNFW 74
           FW+  VL G+Y  N+W
Sbjct: 357 FWIWIVLPGLYYQNYW 372


>SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 1/61 (1%)

Query: 80  EYDNFWHSQTPIIFLGARLPLHIILLYPAFIYHAAYAVSKLNFPRYAEPFAVGLVTVLID 139
           +Y   +      IFL A   +  I L  +F YH    V+      Y +PF + L  VLI 
Sbjct: 109 QYFQIFSKDPRAIFLSALYLIDPIRLVTSFNYHERIVVNSHMLLFYLKPFVIAL-PVLIG 167

Query: 140 I 140
           +
Sbjct: 168 V 168


>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1010

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 4/48 (8%)

Query: 9   ETWLDWCVRKNDIKQLWAAQPTYIISQAVYVLAGLLTLFHAFK--KGG 54
           E WL +  R +     W++ P++ +S AV V+  L TLF  F   KGG
Sbjct: 891 ENWLIFITRCSG--PFWSSFPSWQLSGAVLVVDILATLFCIFGWFKGG 936


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.327    0.143    0.493 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,650,108
Number of Sequences: 5004
Number of extensions: 70748
Number of successful extensions: 190
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 185
Number of HSP's gapped (non-prelim): 9
length of query: 340
length of database: 2,362,478
effective HSP length: 73
effective length of query: 267
effective length of database: 1,997,186
effective search space: 533248662
effective search space used: 533248662
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 54 (25.8 bits)