Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000504-TA|BGIBMGA000504-PA|undefined
(340 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0162 - 1220348-1220428,1220585-1220671,1220757-1220875,122... 31 1.8
05_05_0391 - 24617389-24617508,24617854-24617919,24618156-246182... 30 3.1
12_01_0167 - 1250619-1250699,1250824-1250910,1250992-1251110,125... 29 4.0
02_05_0407 + 28715332-28715385,28715528-28715680,28715810-287158... 29 5.3
12_02_0295 + 17006064-17007063,17007068-17007666 29 7.1
07_01_0776 + 5983684-5983857,5983962-5984072,5984151-5984302,598... 29 7.1
02_05_1018 - 33530834-33530926,33531036-33531098,33531193-335312... 29 7.1
12_02_0291 + 16951154-16952740 28 9.3
02_04_0506 - 23538982-23539221 28 9.3
01_03_0103 - 12567986-12568141,12568307-12568442,12568751-125688... 28 9.3
>12_01_0162 -
1220348-1220428,1220585-1220671,1220757-1220875,
1221543-1221603,1221915-1222307,1223612-1223914
Length = 347
Score = 30.7 bits (66), Expect = 1.8
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 268 KSKEKLTLIDYILILQLALHYVIYWIFVVFFH 299
+S+ K ++ Y+ +L LH + W+ VV FH
Sbjct: 191 QSQSKNMIVTYLSLLNFGLHLFLSWLMVVKFH 222
>05_05_0391 -
24617389-24617508,24617854-24617919,24618156-24618204,
24618855-24618922,24619041-24619086,24619187-24619280,
24619373-24619435,24619722-24619844,24620370-24620403,
24621106-24621168,24621447-24621545,24622398-24622454
Length = 293
Score = 29.9 bits (64), Expect = 3.1
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 201 WASAGKKVEWKTLILATILGMPGGVLLFVPIYHPLHDIYKIHSEITFFLLFAIYGTFVI 259
W + W I+ I G+PG +L+ Y PL++ + S + F F Y +I
Sbjct: 142 WVKGEGVIIWLLAIIYFISGVPGAYVLW---YRPLYNAMRTESALKFGWFFLFYLIHII 197
>12_01_0167 -
1250619-1250699,1250824-1250910,1250992-1251110,
1251200-1251478,1252246-1252660
Length = 326
Score = 29.5 bits (63), Expect = 4.0
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 268 KSKEKLTLIDYILILQLALHYVIYWIFVVFFH 299
+++ K ++ Y+ +L L LH + W+ V FH
Sbjct: 88 QAQSKNMIVTYLAMLNLGLHLFLSWLLTVQFH 119
>02_05_0407 +
28715332-28715385,28715528-28715680,28715810-28715872,
28715988-28716021,28716157-28716279,28716400-28716462,
28716655-28716748,28717049-28717094,28717180-28717247,
28717360-28717408,28717593-28717658,28718876-28719074,
28719344-28719386,28719719-28719923
Length = 419
Score = 29.1 bits (62), Expect = 5.3
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 211 KTLILATILGMPGGVLLFVPIYHPLHDIYKIHSEITFFLLFAIY 254
K LATI GM G L ++ Y PL+ + S +F F Y
Sbjct: 166 KLFFLATIYGMLGMPLSYLMWYRPLYRAMRTDSAFSFGWFFLCY 209
>12_02_0295 + 17006064-17007063,17007068-17007666
Length = 532
Score = 28.7 bits (61), Expect = 7.1
Identities = 10/41 (24%), Positives = 23/41 (56%)
Query: 6 AEMETWLDWCVRKNDIKQLWAAQPTYIISQAVYVLAGLLTL 46
A +ETW+ + + LW+ P ++ +A Y+++ L+ +
Sbjct: 2 ASVETWVGFGSAMAGVGLLWSRMPEHVHEEARYIISSLVPM 42
>07_01_0776 +
5983684-5983857,5983962-5984072,5984151-5984302,
5984403-5984460,5984568-5984616,5984714-5984958,
5985129-5985206,5986016-5986246
Length = 365
Score = 28.7 bits (61), Expect = 7.1
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 193 WYAPKVGQWASAGKKVEWKT--LILATILGMPGGVLLFVPIYHP 234
W A +A+AG W L+ A G P G + P+YHP
Sbjct: 38 WAASLQAYYAAAGHPYAWPAQHLMAAAAAGAPYGAPVPFPMYHP 81
>02_05_1018 -
33530834-33530926,33531036-33531098,33531193-33531236,
33531973-33532118,33532262-33532281,33532365-33532500,
33532585-33532804,33532905-33533085,33533495-33533518,
33534127-33534341,33534425-33534705,33535987-33536210
Length = 548
Score = 28.7 bits (61), Expect = 7.1
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 224 GVLLFVPIYHPLHDIYKIHSE--ITFFLLFAIYGTFVIHGLLSDREKSKEKLTL 275
G +F IY + D K I F + AIYG+F I G L +K+ ++TL
Sbjct: 358 GHSVFPNIYQSMSDRTKFTKALFICFAICTAIYGSFAIIGYLMFGDKTLSQITL 411
>12_02_0291 + 16951154-16952740
Length = 528
Score = 28.3 bits (60), Expect = 9.3
Identities = 10/41 (24%), Positives = 23/41 (56%)
Query: 6 AEMETWLDWCVRKNDIKQLWAAQPTYIISQAVYVLAGLLTL 46
A +ETW+ + + LW+ P ++ +A Y+++ L+ +
Sbjct: 2 ASVETWVGFGSALAGVGLLWSRMPEHVHDEARYIISSLVPM 42
>02_04_0506 - 23538982-23539221
Length = 79
Score = 28.3 bits (60), Expect = 9.3
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 198 VGQWASAGKKVEWKTLILATILGMPGGVLLFVP 230
VG A AG +V W L+ ++ + G + LF P
Sbjct: 45 VGASAGAGDRVPWPRLLAELLIWLVGCITLFAP 77
>01_03_0103 -
12567986-12568141,12568307-12568442,12568751-12568824,
12568932-12569175,12569480-12569766,12570618-12571103,
12571348-12571459,12571540-12571745,12573071-12573276,
12573831-12574162,12574284-12574825,12574967-12576308,
12576386-12576457,12578438-12578505,12579011-12580174
Length = 1808
Score = 28.3 bits (60), Expect = 9.3
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 133 LVTVLIDIPYDIVAVKFVHWTWHDTDPNIFDRH 165
++ L+D V HWTW D D +D H
Sbjct: 215 MILHLLDNHLSFARVGGTHWTWIDVDEQCWDYH 247
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.327 0.143 0.493
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,231,724
Number of Sequences: 37544
Number of extensions: 421676
Number of successful extensions: 948
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 941
Number of HSP's gapped (non-prelim): 10
length of query: 340
length of database: 14,793,348
effective HSP length: 83
effective length of query: 257
effective length of database: 11,677,196
effective search space: 3001039372
effective search space used: 3001039372
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 60 (28.3 bits)
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