GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000504-TA|BGIBMGA000504-PA|undefined
         (340 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24439| Best HMM Match : No HMM Matches (HMM E-Value=.)              57   2e-08
SB_4313| Best HMM Match : Zip (HMM E-Value=1.7e-39)                    29   5.4  
SB_33874| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_1749| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.5  

>SB_24439| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 57.2 bits (132), Expect = 2e-08
 Identities = 24/62 (38%), Positives = 39/62 (62%), Gaps = 1/62 (1%)

Query: 45  TLFHAFKKGGRWPYFWLGTVLHGIYADNFWHFVLPEYDNFWHSQTPIIFLGARLPLHIIL 104
           +LF + + G  +   W+   LHG+  +   +FV P+ DNFWH+Q+ ++ +  RLPLHI+L
Sbjct: 102 SLFISLRNGKTYILLWITLSLHGLTTECVSYFV-PDVDNFWHAQSMVMLVEKRLPLHIVL 160

Query: 105 LY 106
            Y
Sbjct: 161 FY 162



 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 18/42 (42%), Positives = 27/42 (64%)

Query: 286 LHYVIYWIFVVFFHPEREWSTGLHEPVGPCNEVASLVTPFGQ 327
           +H++ Y   V F HPE   +TGLH+ +G C+ V ++ TP GQ
Sbjct: 179 IHFLFYVFLVGFAHPENVRATGLHQRIGNCSHVTAVHTPLGQ 220



 Score = 30.7 bits (66), Expect = 1.8
 Identities = 10/46 (21%), Positives = 26/46 (56%)

Query: 7  EMETWLDWCVRKNDIKQLWAAQPTYIISQAVYVLAGLLTLFHAFKK 52
          ++  ++ W V   + +++W  +PT+++ + V++L   +T  H   K
Sbjct: 4  DVSAFVKWFVIFRNPQEIWREEPTFLMCEIVFLLIAAMTFRHETPK 49


>SB_4313| Best HMM Match : Zip (HMM E-Value=1.7e-39)
          Length = 318

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 15/48 (31%), Positives = 24/48 (50%)

Query: 216 ATILGMPGGVLLFVPIYHPLHDIYKIHSEITFFLLFAIYGTFVIHGLL 263
           A + G+  G  ++V  +  L +  K H +    LLF + G  V+ GLL
Sbjct: 241 AILQGIANGTFIYVTFFEILQNELKGHGKKLLKLLFMVIGFSVVCGLL 288


>SB_33874| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 478

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 2/47 (4%)

Query: 49  AFKKGGRW--PYFWLGTVLHGIYADNFWHFVLPEYDNFWHSQTPIIF 93
           ++KKG  +  P F+L T LH ++ +N    ++ + D  + +   ++F
Sbjct: 249 SYKKGAYYSDPIFFLSTALHKVFPENLTKIIMLDSDLRFRNDINLLF 295


>SB_1749| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 526

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 14/63 (22%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 246 TFFLLFAIYGTFVIHGLLSDREKSKEKL-TLIDYILILQLALHYVIYWIFVVFFHPEREW 304
           TF     +   FV+H    D++ S EK   L+ +IL+ ++     ++++F+   + +  +
Sbjct: 34  TFMFFPDLRNFFVVHSQFCDKDLSLEKCDLLVGHILLYRIYFGMFVFFLFMAVVNCQASF 93

Query: 305 STG 307
             G
Sbjct: 94  CMG 96


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.327    0.143    0.493 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,559,608
Number of Sequences: 59808
Number of extensions: 474726
Number of successful extensions: 1093
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1087
Number of HSP's gapped (non-prelim): 7
length of query: 340
length of database: 16,821,457
effective HSP length: 83
effective length of query: 257
effective length of database: 11,857,393
effective search space: 3047350001
effective search space used: 3047350001
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 60 (28.3 bits)