GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000504-TA|BGIBMGA000504-PA|undefined
         (340 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY061551-1|AAL29099.1|  502|Drosophila melanogaster LP08815p pro...    30   5.3  
AE014297-2187|AAF55299.1|  502|Drosophila melanogaster CG17930-P...    30   5.3  
BT016060-1|AAV36945.1|  535|Drosophila melanogaster LP14756p pro...    29   9.3  
AE014298-946|AAF46196.1|  535|Drosophila melanogaster CG14439-PA...    29   9.3  

>AY061551-1|AAL29099.1|  502|Drosophila melanogaster LP08815p
           protein.
          Length = 502

 Score = 29.9 bits (64), Expect = 5.3
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 122 FPRYAEPFAVGLVTVLIDIPYDIVAVKFV 150
           FP   +PF +GL+  L  + + IV VKFV
Sbjct: 422 FPMRVKPFLIGLIVCLEQVIHIIVIVKFV 450


>AE014297-2187|AAF55299.1|  502|Drosophila melanogaster CG17930-PA
           protein.
          Length = 502

 Score = 29.9 bits (64), Expect = 5.3
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 122 FPRYAEPFAVGLVTVLIDIPYDIVAVKFV 150
           FP   +PF +GL+  L  + + IV VKFV
Sbjct: 422 FPMRVKPFLIGLIVCLEQVIHIIVIVKFV 450


>BT016060-1|AAV36945.1|  535|Drosophila melanogaster LP14756p
           protein.
          Length = 535

 Score = 29.1 bits (62), Expect = 9.3
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 4/67 (5%)

Query: 232 YHPLHDIYKIHSEITFFLLFAIYGTFVIHGLLSDREKSKEKLTLIDYILILQLALHYVI- 290
           Y+ L   Y+I +  TF L+F I G F+  G  +D+      LT+   I  + + L   + 
Sbjct: 92  YNGLGIDYQILAGPTFILIFTIAGVFM--GFAADKYNRVNMLTVCTVIFGIAMILQGTVK 149

Query: 291 -YWIFVV 296
            YW  V+
Sbjct: 150 EYWQLVI 156


>AE014298-946|AAF46196.1|  535|Drosophila melanogaster CG14439-PA
           protein.
          Length = 535

 Score = 29.1 bits (62), Expect = 9.3
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 4/67 (5%)

Query: 232 YHPLHDIYKIHSEITFFLLFAIYGTFVIHGLLSDREKSKEKLTLIDYILILQLALHYVI- 290
           Y+ L   Y+I +  TF L+F I G F+  G  +D+      LT+   I  + + L   + 
Sbjct: 92  YNGLGIDYQILAGPTFILIFTIAGVFM--GFAADKYNRVNMLTVCTVIFGIAMILQGTVK 149

Query: 291 -YWIFVV 296
            YW  V+
Sbjct: 150 EYWQLVI 156


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.327    0.143    0.493 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,456,669
Number of Sequences: 52641
Number of extensions: 674176
Number of successful extensions: 1290
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1288
Number of HSP's gapped (non-prelim): 4
length of query: 340
length of database: 24,830,863
effective HSP length: 85
effective length of query: 255
effective length of database: 20,356,378
effective search space: 5190876390
effective search space used: 5190876390
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 62 (29.1 bits)