Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000504-TA|BGIBMGA000504-PA|undefined
(340 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z37140-2|CAA85502.1| 452|Caenorhabditis elegans Hypothetical pr... 217 7e-57
AF039042-5|AAC48246.1| 307|Caenorhabditis elegans Hypothetical ... 36 0.041
Z70309-7|CAB54292.1| 209|Caenorhabditis elegans Hypothetical pr... 32 0.51
AL117204-39|CAL49444.1| 982|Caenorhabditis elegans Hypothetical... 31 1.2
AL117204-32|CAB55122.2| 727|Caenorhabditis elegans Hypothetical... 31 1.2
AL132949-24|CAB61102.1| 860|Caenorhabditis elegans Hypothetical... 30 2.7
Z47810-7|CAH10843.1| 538|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z47810-6|CAB76718.1| 504|Caenorhabditis elegans Hypothetical pr... 29 3.6
AL031264-3|CAH04705.1| 538|Caenorhabditis elegans Hypothetical ... 29 3.6
AL031264-2|CAB76735.1| 504|Caenorhabditis elegans Hypothetical ... 29 3.6
AF038608-4|AAU05594.2| 310|Caenorhabditis elegans Serpentine re... 29 3.6
L11247-2|AAK84521.1| 1274|Caenorhabditis elegans Npc1 (human nie... 28 8.3
>Z37140-2|CAA85502.1| 452|Caenorhabditis elegans Hypothetical
protein ZK899.2 protein.
Length = 452
Score = 217 bits (531), Expect = 7e-57
Identities = 109/321 (33%), Positives = 168/321 (52%), Gaps = 11/321 (3%)
Query: 11 WLDWCVRKNDIKQLWAAQPTYIISQAVYVLAGLLTLFHAFKKGGRWPYFWLGTVLHGIYA 70
W DW + + ++ +++ + ++ L LT HA++ G R+ W G ++H +
Sbjct: 35 WFDWICKYQPVSTIYENHTSFLFGEILFFLLAGLTFAHAWRSGTRFVLVWFGILVHALNV 94
Query: 71 DNFWHFVLPEYDNFWHSQTPIIFLGARLPLHIIL-LYPAFIYHAAYAVSKLNFPRYAEPF 129
+N +++ P+ DNFW +Q + F GAR PL+I++ +Y F Y + +S+L+ P +A
Sbjct: 95 ENLCYWI-PDMDNFWQAQGILTFFGARAPLYILIGIYHMFDYTSFVLMSRLHLPWWAYGP 153
Query: 130 AVGLVTVLIDIPYDIVAVKFVHWTWHDTDPNIFDRHYWVPWNSXXXXXXXXXXXXXXXXX 189
AVGL V++D+PYDI+ +K V WTWHDTDPNIFDR WVPWNS
Sbjct: 154 AVGLGAVMLDMPYDIMGIKLVWWTWHDTDPNIFDRMNWVPWNSYYFHASFACSFTWILMY 213
Query: 190 IRNWYAPKVGQWASAGKKVEWKTLILATILGMPGGVLLFVPIYHPLHDIYKIHSEITFFL 249
R K W +++ ++ A + G + F +YHPLHDI+K+HSE T
Sbjct: 214 SRYKLVDKEYDWRKLPREI--LCIVFAGMGAFWLGTIQFALLYHPLHDIFKVHSEYTTIA 271
Query: 250 LFAIYGTFVIHGLLSDREKSKEKLTLIDYI----LILQLALHYVIYWIFVVFFHPEREWS 305
+IY VI +DR E + + L +A+ Y+ + I V+ P S
Sbjct: 272 FLSIYALIVI---FADRRNKNENSRVGNKYWFDELAAAIAIEYLFFMIAVLISDPVSIVS 328
Query: 306 TGLHEPVGPCNEVASLVTPFG 326
GLH+P+GPCNE + TP G
Sbjct: 329 DGLHQPIGPCNETQKVQTPTG 349
>AF039042-5|AAC48246.1| 307|Caenorhabditis elegans Hypothetical
protein ZK697.3 protein.
Length = 307
Score = 35.9 bits (79), Expect = 0.041
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 8/70 (11%)
Query: 245 ITFFLLFAIYGTFVIHGLLSDREKSKEKLTLIDYILILQLALHYVIYWIFVVFFHPEREW 304
ITFF L I + LLS KS+EK T ++Y+ ++ +AL+ +++W+ + P+
Sbjct: 205 ITFFWLKKI-----LFFLLSKGLKSREKATQVEYVQMVHIALYILVFWLINL---PQIAH 256
Query: 305 STGLHEPVGP 314
S EP P
Sbjct: 257 SITSSEPYSP 266
>Z70309-7|CAB54292.1| 209|Caenorhabditis elegans Hypothetical
protein R102.8 protein.
Length = 209
Score = 32.3 bits (70), Expect = 0.51
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 76 FVLPEYDNFWHSQTPIIFLGARLPLHIILLYPAFIYHAAYAVSKLNFPRYA-EPFAVGLV 134
+VLPE +NF++ T +++ L + I+L+ FI AY + FP+ +PF +
Sbjct: 23 YVLPESNNFFNPSTYRLYIHVLLTMRILLI--LFI-TVAYVTAFPGFPKTKWDPFVFDIT 79
Query: 135 TVLIDIPYDIVAVKFVHWTWHDTDPNI 161
D D + + W DT P +
Sbjct: 80 VYCNDKTRDTYNL-LIEWWEDDTMPGM 105
>AL117204-39|CAL49444.1| 982|Caenorhabditis elegans Hypothetical
protein Y116A8C.16c protein.
Length = 982
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 266 REKSKEKLTLIDYILILQLALHYVIYWIFVVFF 298
REK K K T Y+LI + L ++++ +FVVFF
Sbjct: 918 REKFKNKRTF--YVLISTIVLSFLLFILFVVFF 948
>AL117204-32|CAB55122.2| 727|Caenorhabditis elegans Hypothetical
protein Y116A8C.16a protein.
Length = 727
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 266 REKSKEKLTLIDYILILQLALHYVIYWIFVVFF 298
REK K K T Y+LI + L ++++ +FVVFF
Sbjct: 663 REKFKNKRTF--YVLISTIVLSFLLFILFVVFF 693
>AL132949-24|CAB61102.1| 860|Caenorhabditis elegans Hypothetical
protein Y53F4B.28 protein.
Length = 860
Score = 29.9 bits (64), Expect = 2.7
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 208 VEWKTLILATILGMPGGVLLFVPIYHPLHDI 238
V WKT+IL ILGM ++L I+ HDI
Sbjct: 809 VFWKTVILVGILGMLHALILLPVIFILTHDI 839
>Z47810-7|CAH10843.1| 538|Caenorhabditis elegans Hypothetical
protein F45E10.2b protein.
Length = 538
Score = 29.5 bits (63), Expect = 3.6
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 205 GKKVEWKTLILATILGMPGGVLLFVPIYHPLHDIYKIHSEITFFLLFAIYGTFVIH 260
GKK ++A + G+ GGVLL V Y + D +H+ I L I ++IH
Sbjct: 227 GKKYRSFIAVIANVFGVIGGVLLAVMAYF-IVDYRLLHASIAIPSLIFITYYWMIH 281
>Z47810-6|CAB76718.1| 504|Caenorhabditis elegans Hypothetical
protein F45E10.2a protein.
Length = 504
Score = 29.5 bits (63), Expect = 3.6
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 205 GKKVEWKTLILATILGMPGGVLLFVPIYHPLHDIYKIHSEITFFLLFAIYGTFVIH 260
GKK ++A + G+ GGVLL V Y + D +H+ I L I ++IH
Sbjct: 193 GKKYRSFIAVIANVFGVIGGVLLAVMAYF-IVDYRLLHASIAIPSLIFITYYWMIH 247
>AL031264-3|CAH04705.1| 538|Caenorhabditis elegans Hypothetical
protein F45E10.2b protein.
Length = 538
Score = 29.5 bits (63), Expect = 3.6
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 205 GKKVEWKTLILATILGMPGGVLLFVPIYHPLHDIYKIHSEITFFLLFAIYGTFVIH 260
GKK ++A + G+ GGVLL V Y + D +H+ I L I ++IH
Sbjct: 227 GKKYRSFIAVIANVFGVIGGVLLAVMAYF-IVDYRLLHASIAIPSLIFITYYWMIH 281
>AL031264-2|CAB76735.1| 504|Caenorhabditis elegans Hypothetical
protein F45E10.2a protein.
Length = 504
Score = 29.5 bits (63), Expect = 3.6
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 205 GKKVEWKTLILATILGMPGGVLLFVPIYHPLHDIYKIHSEITFFLLFAIYGTFVIH 260
GKK ++A + G+ GGVLL V Y + D +H+ I L I ++IH
Sbjct: 193 GKKYRSFIAVIANVFGVIGGVLLAVMAYF-IVDYRLLHASIAIPSLIFITYYWMIH 247
>AF038608-4|AAU05594.2| 310|Caenorhabditis elegans Serpentine
receptor, class z protein37 protein.
Length = 310
Score = 29.5 bits (63), Expect = 3.6
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 4/98 (4%)
Query: 35 QAVYVLAGLLTLFHAFKKGGRW-PYFWLGTVLHGIYADNFWHFVLPEYDNFWHSQTPIIF 93
+ VY++ LLT F A+ + P F L + + F P FW S ++F
Sbjct: 175 EIVYLVVFLLTNFLAWTSAVLYIPIFISVRKLSQLTSAQFHS---PHIYIFWQSIVVVVF 231
Query: 94 LGARLPLHIILLYPAFIYHAAYAVSKLNFPRYAEPFAV 131
+ I LY ++Y ++ +S L++ YA P +
Sbjct: 232 KIHFIKEFISYLYFDYVYCFSFIISTLHYDIYATPLII 269
>L11247-2|AAK84521.1| 1274|Caenorhabditis elegans Npc1 (human
niemann pick c disease)related protein 2 protein.
Length = 1274
Score = 28.3 bits (60), Expect = 8.3
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 212 TLILATILGMPGGVLLFVPIYHPLHDIYKIHSEITFFLLFAIY 254
+LI +T L + GGVL +V + P +++ H+ + + A Y
Sbjct: 715 SLICSTCLFLAGGVLPYVSVSMPAVEVFARHAGLAILMDTAFY 757
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.327 0.143 0.493
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,700,907
Number of Sequences: 27539
Number of extensions: 367043
Number of successful extensions: 894
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 885
Number of HSP's gapped (non-prelim): 12
length of query: 340
length of database: 12,573,161
effective HSP length: 82
effective length of query: 258
effective length of database: 10,314,963
effective search space: 2661260454
effective search space used: 2661260454
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 60 (28.3 bits)
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