GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000504-TA|BGIBMGA000504-PA|undefined
         (340 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    25   0.95 
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    25   1.2  
AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...    24   2.2  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    24   2.2  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    23   3.8  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           23   3.8  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 25.0 bits (52), Expect = 0.95
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 8/65 (12%)

Query: 197 KVGQWASAGKKVEWKTLILAT------ILGMPGGVLLFVPIYHPLHDIYKIHSEITFFLL 250
           K+G W SA  + +   LIL+          +P  ++L VP+ HP +D ++   E+ +F +
Sbjct: 218 KLG-WKSARTRFDILPLILSANGHDPDYFDIPNELVLEVPLSHPTYDWFE-KLELKWFAV 275

Query: 251 FAIYG 255
            A+ G
Sbjct: 276 PAVSG 280


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 10/30 (33%), Positives = 16/30 (53%)

Query: 286 LHYVIYWIFVVFFHPEREWSTGLHEPVGPC 315
           L +  Y + +V+FH +R     L +  GPC
Sbjct: 195 LSHAEYSMLLVYFHLQRHMGNFLIQVYGPC 224


>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 12/27 (44%), Positives = 13/27 (48%)

Query: 230 PIYHPLHDIYKIHSEITFFLLFAIYGT 256
           PIY P   +    S I F  L A YGT
Sbjct: 7   PIYAPFFGVMGAASAIIFSALGAAYGT 33


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 201 WASAGKKVEWKTLILATILGMPGGVLLFVPIYHPL 235
           W +A   +    L+LAT+LG    V+L V  Y PL
Sbjct: 34  WEAAAASLTLGFLVLATVLG-NALVILSVFTYRPL 67


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 10/17 (58%), Positives = 10/17 (58%)

Query: 323 TPFGQYTPCATKDSNSL 339
           TPFG  T     DSNSL
Sbjct: 297 TPFGPVTEKVNNDSNSL 313


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 10/17 (58%), Positives = 10/17 (58%)

Query: 323 TPFGQYTPCATKDSNSL 339
           TPFG  T     DSNSL
Sbjct: 297 TPFGPVTEKVNNDSNSL 313


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.327    0.143    0.493 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,361
Number of Sequences: 429
Number of extensions: 4779
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 6
length of query: 340
length of database: 140,377
effective HSP length: 58
effective length of query: 282
effective length of database: 115,495
effective search space: 32569590
effective search space used: 32569590
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 44 (21.8 bits)