Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000503-TA|BGIBMGA000503-PA|undefined
(587 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g28770.1 68416.m03591 expressed protein 33 0.53
At4g16050.1 68417.m02435 expressed protein 32 0.92
At1g54430.1 68414.m06209 hypothetical protein 31 2.8
At4g37820.1 68417.m05351 expressed protein Kaposi's sarcoma-asso... 30 3.7
At3g57060.1 68416.m06353 non-SMC condensin subunit, XCAP-D2/Cnd1... 30 4.9
At3g51070.1 68416.m05592 dehydration-responsive protein-related ... 30 4.9
At4g08150.1 68417.m01346 homeobox protein knotted-1 like 1 (KNAT... 29 6.5
At2g39410.2 68415.m04837 hydrolase, alpha/beta fold family prote... 29 6.5
At2g27470.1 68415.m03320 CCAAT-box binding transcription factor ... 29 6.5
At1g28390.1 68414.m03488 protein kinase family protein contains ... 29 6.5
At5g56240.1 68418.m07018 expressed protein 29 8.6
At2g46790.2 68415.m05838 pseudo-response regulator 9 (APRR9) / t... 29 8.6
At2g46790.1 68415.m05837 pseudo-response regulator 9 (APRR9) / t... 29 8.6
At1g68370.1 68414.m07809 gravity-responsive protein / altered re... 29 8.6
>At3g28770.1 68416.m03591 expressed protein
Length = 2081
Score = 33.1 bits (72), Expect = 0.53
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 19 DRIELSTDSNARATHLSRARDDNVKKGNASGNSECSKRNNMETLAQGENFEGKDATSQEK 78
+ I + DS A+ + + +DN KG E K N+ +G + E KD + E
Sbjct: 1567 NEILMQADSQAK---IGESLEDNKVKGKEDNGDEVGKENSKTIEVKGRHEESKDGKTNEN 1623
Query: 79 GSTE 82
G E
Sbjct: 1624 GGKE 1627
>At4g16050.1 68417.m02435 expressed protein
Length = 666
Score = 32.3 bits (70), Expect = 0.92
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Query: 39 DDNVKKGNASGNSECSK-RNNMETLAQGENFEGKDATSQEKGSTENRDEXXXXXXXXXXX 97
DD +KK S N + R + E+ A+ E+ E D E TE+ DE
Sbjct: 488 DDEMKKAKHSTNKRRKRAREDDESAAETEDDESADTEDDESADTED-DESAETEDDDNMT 546
Query: 98 XXDDITSNKRQHAEDNQETDG 118
I N R+ ++D + T+G
Sbjct: 547 IAQRI--NSRKKSDDIENTEG 565
>At1g54430.1 68414.m06209 hypothetical protein
Length = 1639
Score = 30.7 bits (66), Expect = 2.8
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 353 TQEASSLSHNITHSN-PYQMYIHIRKQIHHRQRGLFPVKPKPPKDFNKYLMN 403
T + + N+ H P+ IH Q HH+ L P + KPPK Y+ +
Sbjct: 354 TSMGAQIDKNVMHKGGPFTFRIH--GQNHHKLGSLVPEEGKPPKILQLYIFD 403
>At4g37820.1 68417.m05351 expressed protein Kaposi's
sarcoma-associated herpes-like virus ORF73gene, Kaposi's
sarcoma-associated herpesvirus, U52064
Length = 532
Score = 30.3 bits (65), Expect = 3.7
Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Query: 35 SRARDDNVKKGNASGNSECSKRNNMETLAQGENFEGKDATSQEKGSTENRDEX--XXXXX 92
S +++ N K +SE ++ N + + E E D+++ +KG + DE
Sbjct: 399 SSSQEGNENKETEKKSSESQRKENTNSEKKIEQVESTDSSNTQKGDEQKTDESKRESGND 458
Query: 93 XXXXXXXDDITSNKRQHAEDN 113
DD + + + E+N
Sbjct: 459 TSNKETEDDSSKTESEKKEEN 479
>At3g57060.1 68416.m06353 non-SMC condensin subunit, XCAP-D2/Cnd1
family protein similar to 13S condensin XCAP-D2 subunit
[Xenopus laevis] GI:3764087; contains Pfam profile
PF04594: Non-SMC condensin subunit, XCAP-D2/Cnd1
Length = 1439
Score = 29.9 bits (64), Expect = 4.9
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 325 SSSCLELHPRKRKLKSSKDHSRESKSDSTQEASSLSHNI 363
S+ C +PR K+S ES+S ST+ +SS+ N+
Sbjct: 1395 SAQCGTTNPRSLNQKTSGGEEGESESKSTESSSSIRRNL 1433
>At3g51070.1 68416.m05592 dehydration-responsive protein-related
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 895
Score = 29.9 bits (64), Expect = 4.9
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 35 SRARDDNVKKGNASGNSECSKRNNMETLAQGENFEGKDATSQEKGSTE 82
S+ ++ + SGN E ++N +T A EN +G+ + E G E
Sbjct: 235 SKNEENGQPEEQNSGNEETGQQNEEKTTASEENGKGEKSMKDENGQQE 282
>At4g08150.1 68417.m01346 homeobox protein knotted-1 like 1 (KNAT1)
identical to homeobox protein knotted-1 like 1 (KNAT1)
SP:P46639 from [Arabidopsis thaliana]
Length = 398
Score = 29.5 bits (63), Expect = 6.5
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 345 SRESKSDSTQEASSLSHNITHSNPYQMYIHIRKQIHHRQRGLFP 388
S +K+D+T + ++ ++N SN Y + HH Q LFP
Sbjct: 23 SSSNKNDNTSDTNNNNNNNNSSNYGPGYNNTNNNNHHHQHMLFP 66
>At2g39410.2 68415.m04837 hydrolase, alpha/beta fold family protein
similar to monoglyceride lipase from [Homo sapiens]
GI:14594904, [Mus musculus] GI:2632162; contains Pfam
profile PF00561: hydrolase, alpha/beta fold family
Length = 317
Score = 29.5 bits (63), Expect = 6.5
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 425 LPPQMINEFMTQEKE-RHRLRIQHLVEKEKLVLAVEQEILRVHGRAERAVANQSLPFSV 482
+P Q I E +E E R ++R L K + L E+LR+ E+ + SLPF V
Sbjct: 175 IPSQDIIEISYKEPEIRKQVRENPLCSKGRPRLKTAYELLRISNDLEKRLQEVSLPFLV 233
>At2g27470.1 68415.m03320 CCAAT-box binding transcription factor
subunit HAP3-related contains Pfam PF00808 :
Histone-like transcription factor (CBF/NF-Y) and
archaeal histone; similar to polymerase epsilon p17
subunit (DNA polymerase epsilon subunit 3) (YB-like
protein 1) (YBL1) (NF-YB-like protein) (SP:Q9JKP7) [Mus
musculus];
Length = 275
Score = 29.5 bits (63), Expect = 6.5
Identities = 18/95 (18%), Positives = 38/95 (40%), Gaps = 1/95 (1%)
Query: 20 RIELSTDSNARATHLSRARDDNVK-KGNASGNSECSKRNNMETLAQGENFEGKDATSQEK 78
+I+ T N T ++N + + +GN E + ++ T G + E D ++E
Sbjct: 152 KIDEETKRNDEETENDNTEEENGNDEEDENGNDEEDENDDENTEENGNDEENDDENTEEN 211
Query: 79 GSTENRDEXXXXXXXXXXXXXDDITSNKRQHAEDN 113
G+ E ++ + + N+ E+N
Sbjct: 212 GNDEENEKEDEENSMEENGNESEESGNEDHSMEEN 246
>At1g28390.1 68414.m03488 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 470
Score = 29.5 bits (63), Expect = 6.5
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 450 EKEKLVLAVEQEILRVHGRAERAVANQSLPFSVCTILRDREVYNVLAPEQE---EKRN-A 505
E+ + VLAVE+E +H R R + ++ S T D +VY L PE+ +RN
Sbjct: 349 ERSENVLAVEEEKEEIHVRIVRGGSRKNRKVSNVTTSVD-DVYERLVPEETLPFRRRNFV 407
Query: 506 QRSRCNGRQI 515
RSR G ++
Sbjct: 408 LRSRSVGAKV 417
>At5g56240.1 68418.m07018 expressed protein
Length = 986
Score = 29.1 bits (62), Expect = 8.6
Identities = 14/53 (26%), Positives = 25/53 (47%)
Query: 32 THLSRARDDNVKKGNASGNSECSKRNNMETLAQGENFEGKDATSQEKGSTENR 84
TH RDD+ G+ N+E R+N + + + + +S+E+G R
Sbjct: 573 THERELRDDDYVSGDDGENNEVLLRSNPSSSGYDDYNDDDEESSEEEGDNNKR 625
>At2g46790.2 68415.m05838 pseudo-response regulator 9 (APRR9) /
timing of CAB expression 1-like protein (TL1) identical
to pseudo-response regulator 9 GI:10281000 from
[Arabidopsis thaliana], timing of CAB expression 1-like
protein [Arabidopsis thaliana] GI:9247022; contains Pfam
profile PF00072: Response regulator receiver domain;
identical to cDNA timing of CAB expression 1-like
protein GI:9247021
Length = 351
Score = 29.1 bits (62), Expect = 8.6
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Query: 12 NIWYTYWDRIELSTDSNARATHLSRARDDNVKKGNASGNSECSKRNNMETLAQGENFEGK 71
N+W W R+ L D A A L A N++ + + + ++ + AQ N+ G
Sbjct: 33 NLWQHVWRRLTLRDDPTAHAQSLP-ASQHNLEDTDET-CEDSRYHSDQGSGAQAINYNGH 90
Query: 72 DATSQEKGSTENRDE 86
+ + S + RDE
Sbjct: 91 NKLMENGKSVDERDE 105
>At2g46790.1 68415.m05837 pseudo-response regulator 9 (APRR9) /
timing of CAB expression 1-like protein (TL1) identical
to pseudo-response regulator 9 GI:10281000 from
[Arabidopsis thaliana], timing of CAB expression 1-like
protein [Arabidopsis thaliana] GI:9247022; contains Pfam
profile PF00072: Response regulator receiver domain;
identical to cDNA timing of CAB expression 1-like
protein GI:9247021
Length = 468
Score = 29.1 bits (62), Expect = 8.6
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Query: 12 NIWYTYWDRIELSTDSNARATHLSRARDDNVKKGNASGNSECSKRNNMETLAQGENFEGK 71
N+W W R+ L D A A L A N++ + + + ++ + AQ N+ G
Sbjct: 150 NLWQHVWRRLTLRDDPTAHAQSLP-ASQHNLEDTDET-CEDSRYHSDQGSGAQAINYNGH 207
Query: 72 DATSQEKGSTENRDE 86
+ + S + RDE
Sbjct: 208 NKLMENGKSVDERDE 222
>At1g68370.1 68414.m07809 gravity-responsive protein / altered
response to gravity protein (ARG1) identical to Altered
Response to Gravity [Arabidopsis thaliana] GI:4249662;
contains Pfam profile PF00226 DnaJ domain
Length = 410
Score = 29.1 bits (62), Expect = 8.6
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 57 NNMETLAQGENFEGKDATSQEKGSTENRDE 86
N + AQG+ +G ++ E+G TENRD+
Sbjct: 363 NGSSSKAQGDESKGDGDSAGEEGGTENRDK 392
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.313 0.128 0.380
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,489,702
Number of Sequences: 28952
Number of extensions: 453276
Number of successful extensions: 1300
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1284
Number of HSP's gapped (non-prelim): 24
length of query: 587
length of database: 12,070,560
effective HSP length: 85
effective length of query: 502
effective length of database: 9,609,640
effective search space: 4824039280
effective search space used: 4824039280
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 62 (29.1 bits)
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