Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000503-TA|BGIBMGA000503-PA|undefined
(587 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma sub... 34 0.063
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 32 0.19
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch... 29 1.8
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr... 28 4.2
SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease Pac1|S... 28 4.2
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 27 5.5
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 27 5.5
SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch... 27 5.5
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc... 27 5.5
SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual 27 7.3
SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|... 27 9.6
SPAC22E12.06c |gmh3||alpha-1,2-galactosyltransferase Gmh3|Schizo... 27 9.6
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 27 9.6
SPAC6G10.03c |||abhydrolase family protein, unknown biological r... 27 9.6
>SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma
subunit Gcd10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 462
Score = 33.9 bits (74), Expect = 0.063
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 485 ILRDREVYNVLAPEQEEKRNAQRSRCNGRQINSWLQEVDDKWEKIKEGMLRRQHTEAQTL 544
+L+ REV + E+E+K N + + C G Q+ + +E+D+ IK G LR + Q
Sbjct: 66 VLKTREVQYI---EEEKKTNQELNDCRGNQLMT-QEEIDELRANIKAGGLRAEEAIKQLT 121
Query: 545 HAVQT 549
++ +T
Sbjct: 122 NSSKT 126
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 32.3 bits (70), Expect = 0.19
Identities = 41/172 (23%), Positives = 72/172 (41%), Gaps = 15/172 (8%)
Query: 383 QRGLFPVKPKPPKDFNKYLMNRCTYTL----QRNVN-PEP-----QIEIPHNLPPQMINE 432
+ G P+ + K ++N T+T Q+N + P P + E P PPQ+ E
Sbjct: 461 RNGFAPIVKQQKKSSALKIVNPVTHTEVVVPQKNASSPNPSETNSRAETPTAAPPQISEE 520
Query: 433 FMTQEKERHRL----RIQHLVEKEKLVLAVEQEILRVHGRAERAVANQSLPFSVCTILRD 488
+Q K+ +L RIQ E E A E+ L A+R Q+ + R+
Sbjct: 521 EASQRKDAIKLAIQQRIQEKAEAEAKRKAEEKARLEAEENAKREAEEQAKREAEEKAKRE 580
Query: 489 REVYNVLAPEQEEKRNAQRSRCNGRQINSWLQEVDDKWEKIKEGMLRRQHTE 540
E E++ KR A+ + + + +E ++K ++ E +R+ E
Sbjct: 581 AEEKAKREAEEKAKREAEENAKREAEEKA-KREAEEKAKREAEEKAKREAEE 631
>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1108
Score = 29.1 bits (62), Expect = 1.8
Identities = 23/105 (21%), Positives = 44/105 (41%), Gaps = 3/105 (2%)
Query: 379 IHHRQRGLFPVKPKPP--KDFNKYLMNRCTYTLQRNVNPEPQIEIPHNLPPQMINEFMTQ 436
IH +R ++ + P KD Y + RC Y LQ P E+ + ++ FM
Sbjct: 234 IHAFRRIVYQIPTDSPQGKDSIAYALQRCFYNLQFMNEPVSTTELTKSFGWDSLDSFMQH 293
Query: 437 EKERHRLRIQHLVEKEKLVLAVEQEILRVH-GRAERAVANQSLPF 480
+ + +Q +E+ VE + + G+ + +A ++ F
Sbjct: 294 DVQEFNRVLQDNLERSMRDTKVENALTNLFVGKMKSYIACVNVNF 338
>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 501
Score = 27.9 bits (59), Expect = 4.2
Identities = 24/89 (26%), Positives = 32/89 (35%), Gaps = 6/89 (6%)
Query: 35 SRARDD-NVKKGNASGNSECSK--RNNMETLAQGENFEGKDATSQEKGSTENRDEXXXXX 91
S+ RD+ N+ K S S S N+ T FE D + S E
Sbjct: 230 SKKRDNVNIPKRTYSARSIPSNISSTNVATTPSNTIFEMDDTLKADSSSNEYHSPTNTLP 289
Query: 92 XXXXXXXXDD---ITSNKRQHAEDNQETD 117
D+ +SN+ QH EDN D
Sbjct: 290 SYHTEADLDNSSIASSNRTQHTEDNYNKD 318
>SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease
Pac1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 27.9 bits (59), Expect = 4.2
Identities = 10/36 (27%), Positives = 21/36 (58%)
Query: 217 KSPVASPKPHSSKDNSEDTDDQKTQESSGPKVPPLK 252
+ P + PK +++N+E T ++ + P +PPL+
Sbjct: 103 EEPSSHPKNQKNQENNEPTSEEFEEGEYPPPLPPLR 138
>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 497
Score = 27.5 bits (58), Expect = 5.5
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 413 VNPEPQIEIPHNLPPQMINEFMTQEKERH 441
++ P I+ P NLP ++ E M ++ERH
Sbjct: 15 LSKSPLIKKPENLPEWILPEAMKADRERH 43
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 27.5 bits (58), Expect = 5.5
Identities = 23/129 (17%), Positives = 59/129 (45%), Gaps = 3/129 (2%)
Query: 324 HSSSCLELHPRKRKLKSSKDHSRESKSDSTQEASSLSHNITHSNPYQMYIHIRKQIHHRQ 383
++ C E +++L++ ++ + ++K DST + S+L + + +RK+ +
Sbjct: 615 YNDKCHEFDELQKRLQTLEEENNKAKEDSTSKTSNLLEQLKMTE--AEVDSLRKENEENK 672
Query: 384 RGLFPVKPKPPK-DFNKYLMNRCTYTLQRNVNPEPQIEIPHNLPPQMINEFMTQEKERHR 442
+ + + + K + NK L+N +L ++ + + ++++ KERH
Sbjct: 673 QVIALKESELVKSNDNKLLLNEQIESLNDQLSQLKTEMESVTTSKESLADYLSNLKERHN 732
Query: 443 LRIQHLVEK 451
+ L +K
Sbjct: 733 DELDSLNKK 741
>SPBC9B6.11c |||CCR4/nocturin family
endoribonuclease|Schizosaccharomyces pombe|chr
2|||Manual
Length = 502
Score = 27.5 bits (58), Expect = 5.5
Identities = 14/71 (19%), Positives = 28/71 (39%)
Query: 330 ELHPRKRKLKSSKDHSRESKSDSTQEASSLSHNITHSNPYQMYIHIRKQIHHRQRGLFPV 389
EL + K+ D + + K + ++S T S P + +H++ R +
Sbjct: 339 ELEEKNASTKTENDSNEDDKEECQSSSTSSVPESTASTPKKRILHVQNDYVPHYRSFYQQ 398
Query: 390 KPKPPKDFNKY 400
+ P F+ Y
Sbjct: 399 HEQNPVLFSLY 409
>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 27.5 bits (58), Expect = 5.5
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 419 IEIPHNLPPQMINEFMTQEKERHRLRIQHLVEKEKLVLAVEQ 460
+ + N + +NE T ER L ++ V+ +KL + VEQ
Sbjct: 425 LSLSTNSDGETLNEINTNNPEREHLIVRLKVDSQKLKIIVEQ 466
>SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 583
Score = 27.1 bits (57), Expect = 7.3
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 516 NSWLQEVDDKWEKIKE----GMLRRQHTEAQTLHAVQTMGWEWKLKELGLCDFKTIPKID 571
N+ E+D E +K+ G + +T L + GW W+L + ++ T+ K+D
Sbjct: 346 NAKADEIDRLLEVVKQIEEAGAIVYNNTNFYNLDVISNDGWNWELGSVNESEY-TVVKVD 404
>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1018
Score = 26.6 bits (56), Expect = 9.6
Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Query: 456 LAVEQEILRVHGRAERAVANQSLPFSVCTILRDREVYNVLAPEQEEKRNAQRSRCNGRQI 515
LA+ + L++ R E VAN + + L +R + + + + N C ++
Sbjct: 227 LAITSDDLKIALR-ETLVANDAFSKLLLPALFERLKASTVRIKIDAL-NIYIEACKTWRV 284
Query: 516 NSWLQEVDDKWEKIKEGMLRRQHTEAQTL 544
++L D WE IK+ +L E Q L
Sbjct: 285 GAYLWSAKDFWESIKQEILNSTDAELQNL 313
>SPAC22E12.06c |gmh3||alpha-1,2-galactosyltransferase
Gmh3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 26.6 bits (56), Expect = 9.6
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 10/97 (10%)
Query: 394 PKDFNKYLMNRCTYTLQRNVNPEPQIEIPHNLPP---QMINEFMTQEKERHRLRIQHLVE 450
P+ FN+ + NR Y N E N+PP +M T K H I L +
Sbjct: 105 PETFNQCIENRINYAKHHNYGFEYVNVSQMNIPPVWAKMPAIIQTMNKHPHAKWIWWL-D 163
Query: 451 KEKLV----LAVEQEILRVHGRAERAVANQSL--PFS 481
++ L+ L++++ IL E+ + N+ + PFS
Sbjct: 164 QDALILNTELSIQEHILSPDVLVEKLMKNEPMISPFS 200
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 26.6 bits (56), Expect = 9.6
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 396 DFNKYLMNRCTYTLQRNVNPEPQIEIPHNLPPQM 429
++ YL N+ Q P Q++ +NLPP +
Sbjct: 493 NYQSYLTNKARNATQPTQPPVSQVDYSNNLPPNL 526
>SPAC6G10.03c |||abhydrolase family protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 428
Score = 26.6 bits (56), Expect = 9.6
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Query: 356 ASSLSHNITHSNPYQMYIHIRKQIHHRQRGLFPVKPKPPKDFNKYLMNRCTYTLQRNVNP 415
ASS H + P + Q GL P +P PK+ L T+ ++NV P
Sbjct: 226 ASSAVHAVMDEPPLSNVTNEVLQTQEETTGLEPSRPSKPKN---PLPRFITFLWEQNVTP 282
Query: 416 EPQIEIPHNLPPQMIN 431
+ + L P++++
Sbjct: 283 FSLLRLSGPLGPKLMS 298
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.313 0.128 0.380
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,199,194
Number of Sequences: 5004
Number of extensions: 85006
Number of successful extensions: 261
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 251
Number of HSP's gapped (non-prelim): 18
length of query: 587
length of database: 2,362,478
effective HSP length: 77
effective length of query: 510
effective length of database: 1,977,170
effective search space: 1008356700
effective search space used: 1008356700
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 56 (26.6 bits)
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