GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000501-TA|BGIBMGA000501-PA|undefined
         (55 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81536-10|CAB04361.1|  340|Caenorhabditis elegans Hypothetical p...    28   0.91 
Z74042-9|CAA98526.1|  325|Caenorhabditis elegans Hypothetical pr...    28   0.91 
Z50044-9|CAA90361.1|  186|Caenorhabditis elegans Hypothetical pr...    25   8.4  

>Z81536-10|CAB04361.1|  340|Caenorhabditis elegans Hypothetical
           protein F40D4.13 protein.
          Length = 340

 Score = 27.9 bits (59), Expect = 0.91
 Identities = 13/43 (30%), Positives = 22/43 (51%)

Query: 6   NAVGGMVQVECGLLIDVVKQDVGTTNDGNTARGFFRDAEGTAR 48
           +A  G   V  G L+ +++    TT+D NTA G  +   G+ +
Sbjct: 109 SATAGTQLVMFGSLVKLLESSKQTTSDNNTAVGLIKSINGSLK 151


>Z74042-9|CAA98526.1|  325|Caenorhabditis elegans Hypothetical
           protein T11F9.10 protein.
          Length = 325

 Score = 27.9 bits (59), Expect = 0.91
 Identities = 13/43 (30%), Positives = 22/43 (51%)

Query: 6   NAVGGMVQVECGLLIDVVKQDVGTTNDGNTARGFFRDAEGTAR 48
           +A  G   V  G L+ +++    TT+D NTA G  +   G+ +
Sbjct: 141 SATAGTQLVMFGSLVKLLESSKQTTSDNNTAVGLIKSINGSLK 183


>Z50044-9|CAA90361.1|  186|Caenorhabditis elegans Hypothetical
          protein F22B5.10 protein.
          Length = 186

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/21 (52%), Positives = 13/21 (61%)

Query: 24 KQDVGTTNDGNTARGFFRDAE 44
          KQ+VG TND N  R   R+ E
Sbjct: 51 KQEVGDTNDKNIKRKLEREEE 71


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.139    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,278,854
Number of Sequences: 27539
Number of extensions: 35916
Number of successful extensions: 34
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 31
Number of HSP's gapped (non-prelim): 3
length of query: 55
length of database: 12,573,161
effective HSP length: 36
effective length of query: 19
effective length of database: 11,581,757
effective search space: 220053383
effective search space used: 220053383
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)