Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000500-TA|BGIBMGA000500-PA|IPR000859|CUB
         (382 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44568| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.29 
SB_25832| Best HMM Match : fn3 (HMM E-Value=4.2e-08)                   33   0.51 
SB_16910| Best HMM Match : EGF (HMM E-Value=0)                         31   2.1  
SB_19751| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_15612| Best HMM Match : Keratin_B2 (HMM E-Value=0.61)               29   6.3  

>SB_44568| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 826

 Score = 33.5 bits (73), Expect = 0.29
 Identities = 24/93 (25%), Positives = 35/93 (37%), Gaps = 6/93 (6%)

Query: 43  EGRIFSRTCGSTTNVNNTYFTSXXXXXXXXXXQACTLIVNRCNNNICQLRIDFLDFVIAQ 102
           E  +   +C  T   +   FTS            CT ++      I  LR ++ D  +  
Sbjct: 541 ERTVTDHSCSGTYVADGGRFTSPDFPLNYPDNSDCTWLIKVAEGKIISLRFNYFD--VEG 598

Query: 103 PDGDGVCVTDSITITGGNTIVPPLCGDLTGQTI 135
           P    +C  D I I  G ++  PL G   G TI
Sbjct: 599 P----ICTYDWIAIHDGPSVKYPLLGKFCGSTI 627


>SB_25832| Best HMM Match : fn3 (HMM E-Value=4.2e-08)
          Length = 313

 Score = 32.7 bits (71), Expect = 0.51
 Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 7/88 (7%)

Query: 192 NSFNYGTGANTLLSASLVTGTRQIAN-----LNYGICIRMEAGYCAIQYAQTANDVFSFT 246
           +SF  G G     S S++T  R   N     +   +  ++  GY     AQ A  + + +
Sbjct: 133 DSFLRGVGVKGFRSGSVITSFRLTRNDSQIDMTSSLNAKLTDGYLGNLKAQVA--MATPS 190

Query: 247 VTGDVEGADNTVLGTAVGAVNDGACVTD 274
            TG  EG+D+  +G+   A  +GAC T+
Sbjct: 191 NTGAREGSDSATVGSVGPAHGEGACTTN 218


>SB_16910| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1552

 Score = 30.7 bits (66), Expect = 2.1
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 5/57 (8%)

Query: 88  ICQLRIDFLDFVIAQPDGDGVCVTDSITITGGNTIVPP---LCGDLTGQTI-FVDFN 140
           +C +R      VIA   G+G CVT+ +T++  +T V     LCG LT   +  +D N
Sbjct: 306 VCTVRAPHRGSVIACSTGEGCCVTE-VTVSCTHTFVAVFWCLCGFLTWNLVPIIDLN 361


>SB_19751| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2644

 Score = 29.5 bits (63), Expect = 4.8
 Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 10/89 (11%)

Query: 183 YYTGITDTINSFNYGTGANTLLSASLVTGTRQIANLNYGICIRMEAGYCAIQYAQTANDV 242
           +  GI+ +I   + G    T  +  L+T T+ + NL  GI    E  +C   ++Q   D 
Sbjct: 782 FLDGISCSIVPSDAGGAITTPPTTPLITTTQPVNNL--GINCDFEKDFCPQAWSQDVTDT 839

Query: 243 FSFT-------VTGDVEGADNTVLGTAVG 264
           F++T        +G     D+T LGTA G
Sbjct: 840 FNWTRQSGSTSSSGTGPSVDHT-LGTAQG 867


>SB_15612| Best HMM Match : Keratin_B2 (HMM E-Value=0.61)
          Length = 343

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 12/47 (25%), Positives = 23/47 (48%)

Query: 183 YYTGITDTINSFNYGTGANTLLSASLVTGTRQIANLNYGICIRMEAG 229
           Y+ G +    +  +  G++ L   S  + +  IA L+YG+C+    G
Sbjct: 214 YFAGCSRIQRTLRHARGSSVLCGRSQGSSSMSIAVLSYGVCVFSNVG 260


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.321    0.137    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,905,129
Number of Sequences: 59808
Number of extensions: 442884
Number of successful extensions: 909
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 905
Number of HSP's gapped (non-prelim): 7
length of query: 382
length of database: 16,821,457
effective HSP length: 83
effective length of query: 299
effective length of database: 11,857,393
effective search space: 3545360507
effective search space used: 3545360507
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)