Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000500-TA|BGIBMGA000500-PA|IPR000859|CUB
         (382 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g37210.2 68417.m05267 tetratricopeptide repeat (TPR)-containi...    30   3.0  
At4g37210.1 68417.m05268 tetratricopeptide repeat (TPR)-containi...    30   3.0  
At5g64100.1 68418.m08050 peroxidase, putative identical to perox...    29   6.9  

>At4g37210.2 68417.m05267 tetratricopeptide repeat (TPR)-containing
           protein low similarity to SP|Q02508 Protein HGV2
           Halocynthia roretzi; contains Pfam profile PF00515 TPR
           Domain
          Length = 377

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 8/88 (9%)

Query: 189 DTINSFNYGTGANTLLSASLVTGTRQIANLNYGICIRMEAGYC----AIQYAQTANDVFS 244
           D  +S +    A ++L   +   +R+ A LN+ ICI +E G C    AI Y Q A  +  
Sbjct: 255 DIESSLSDYKNALSILERLVEPDSRRTAELNFRICICLETG-CQPKEAIPYCQKALLICK 313

Query: 245 F---TVTGDVEGADNTVLGTAVGAVNDG 269
                ++ +++GA  +   + V  +++G
Sbjct: 314 ARMERLSNEIKGASGSATSSTVSEIDEG 341


>At4g37210.1 68417.m05268 tetratricopeptide repeat (TPR)-containing
           protein low similarity to SP|Q02508 Protein HGV2
           Halocynthia roretzi; contains Pfam profile PF00515 TPR
           Domain
          Length = 492

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 8/88 (9%)

Query: 189 DTINSFNYGTGANTLLSASLVTGTRQIANLNYGICIRMEAGYC----AIQYAQTANDVFS 244
           D  +S +    A ++L   +   +R+ A LN+ ICI +E G C    AI Y Q A  +  
Sbjct: 255 DIESSLSDYKNALSILERLVEPDSRRTAELNFRICICLETG-CQPKEAIPYCQKALLICK 313

Query: 245 F---TVTGDVEGADNTVLGTAVGAVNDG 269
                ++ +++GA  +   + V  +++G
Sbjct: 314 ARMERLSNEIKGASGSATSSTVSEIDEG 341


>At5g64100.1 68418.m08050 peroxidase, putative identical to
           peroxidase ATP3a [Arabidopsis thaliana]
           gi|1546698|emb|CAA67340
          Length = 331

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 2/30 (6%)

Query: 112 DSITITGGNTIVPPLCGDLTGQTIFVDFNG 141
           D +T+ GG+TI    CG + G+  FV+FNG
Sbjct: 190 DLVTLVGGHTIGTAGCGLVRGR--FVNFNG 217


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.321    0.137    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,255,913
Number of Sequences: 28952
Number of extensions: 305053
Number of successful extensions: 573
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 573
Number of HSP's gapped (non-prelim): 3
length of query: 382
length of database: 12,070,560
effective HSP length: 82
effective length of query: 300
effective length of database: 9,696,496
effective search space: 2908948800
effective search space used: 2908948800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)