GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000500-TA|BGIBMGA000500-PA|IPR000859|CUB
         (382 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.06c |||ribose-phosphate pyrophosphokinase |Schizosacchar...    27   3.3  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    27   3.3  

>SPBC3D6.06c |||ribose-phosphate pyrophosphokinase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 341

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 16/61 (26%), Positives = 26/61 (42%)

Query: 208 LVTGTRQIANLNYGICIRMEAGYCAIQYAQTANDVFSFTVTGDVEGADNTVLGTAVGAVN 267
           +V GT     L   IC  +      ++ ++ +N   S  +   V G D  ++  A G VN
Sbjct: 5   VVFGTESHPKLTESICEHLCLDIGRVELSKFSNGETSVRIKQSVRGCDVYIVSPASGQVN 64

Query: 268 D 268
           D
Sbjct: 65  D 65


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)

Query: 181 LQYYTG-ITDTINSFNYGTGANTLLSASLVTGTRQIANLNY 220
           ++Y+T  ITDT +   Y TG  TL     +T + +I+++ Y
Sbjct: 343 VEYFTKTITDTSSIVTYSTGVETLYETETITSS-EISSIIY 382


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.137    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,580,649
Number of Sequences: 5004
Number of extensions: 57934
Number of successful extensions: 128
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 127
Number of HSP's gapped (non-prelim): 2
length of query: 382
length of database: 2,362,478
effective HSP length: 74
effective length of query: 308
effective length of database: 1,992,182
effective search space: 613592056
effective search space used: 613592056
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)