GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000500-TA|BGIBMGA000500-PA|IPR000859|CUB
         (382 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0461 - 4063614-4064375,4064439-4066017,4066041-4066086,406...    29   4.7  
01_06_0653 + 30891231-30891276,30891624-30892898,30893775-30893878     29   8.2  

>08_01_0461 - 4063614-4064375,4064439-4066017,4066041-4066086,
            4066416-4066933,4067435-4067694,4068089-4068594,
            4068667-4071319
          Length = 2107

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 13/37 (35%), Positives = 20/37 (54%)

Query: 17   TANTIYNTHDSVADEFDNDLDHHEEREGRIFSRTCGS 53
            TANT+ +  D +   FD ++D+H E +  I    C S
Sbjct: 1924 TANTLNSRGDLIRQIFDKEIDNHHEEKLLICQICCSS 1960


>01_06_0653 + 30891231-30891276,30891624-30892898,30893775-30893878
          Length = 474

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 4/64 (6%)

Query: 171 DCPGLAPNG-CLQYYTGITDT---INSFNYGTGANTLLSASLVTGTRQIANLNYGICIRM 226
           DC  + P+  C Q  T  +      NS+    GAN +      TG R   + +Y  C+ M
Sbjct: 389 DCSAIQPSQPCYQPDTLASHASYAFNSYYQQNGANDVACDFGGTGVRTTKDPSYDTCVYM 448

Query: 227 EAGY 230
            AGY
Sbjct: 449 AAGY 452


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.321    0.137    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,195,962
Number of Sequences: 37544
Number of extensions: 375061
Number of successful extensions: 678
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 677
Number of HSP's gapped (non-prelim): 2
length of query: 382
length of database: 14,793,348
effective HSP length: 83
effective length of query: 299
effective length of database: 11,677,196
effective search space: 3491481604
effective search space used: 3491481604
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)