GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000500-TA|BGIBMGA000500-PA|IPR000859|CUB
         (382 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439060-7|CAD27758.1|  849|Anopheles gambiae putative V-ATPase ...    25   4.6  
CR954256-7|CAJ14148.1| 1087|Anopheles gambiae predicted protein ...    24   6.1  

>AJ439060-7|CAD27758.1|  849|Anopheles gambiae putative V-ATPase
           protein.
          Length = 849

 Score = 24.6 bits (51), Expect = 4.6
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 301 VPVQKCAIN-WPEGMIPEAINTVQERLELSNTEDVE 335
           V + +C+++ WP    P  I  ++ RLE +  E +E
Sbjct: 77  VQIPECSVDDWPRAPNPREIIDLEARLEKTENEILE 112


>CR954256-7|CAJ14148.1| 1087|Anopheles gambiae predicted protein
           protein.
          Length = 1087

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 85  NNNICQLRIDFLDFVIAQPDGDGVCVTDSI 114
           + N  +L + FL +    PD DG+  +DS+
Sbjct: 276 DKNNPRLALIFLGYTTPPPDSDGIKYSDSL 305


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.321    0.137    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 377,081
Number of Sequences: 2123
Number of extensions: 13376
Number of successful extensions: 59
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 58
Number of HSP's gapped (non-prelim): 2
length of query: 382
length of database: 516,269
effective HSP length: 65
effective length of query: 317
effective length of database: 378,274
effective search space: 119912858
effective search space used: 119912858
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 49 (23.8 bits)