GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000500-TA|BGIBMGA000500-PA|IPR000859|CUB
         (382 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-1547|AAF50347.2|  415|Drosophila melanogaster CG13313-P...   226   3e-59
AE014296-1523|AAF50364.1|  401|Drosophila melanogaster CG13310-P...   132   1e-30
AE014297-2648|AAF55656.1|  555|Drosophila melanogaster CG14280-P...    96   8e-20
AY052134-1|AAK93558.1|  704|Drosophila melanogaster SD08605p pro...    51   2e-06
AE014134-536|AAF51163.1|  704|Drosophila melanogaster CG17264-PA...    51   2e-06
AE013599-1691|AAF58386.1|  392|Drosophila melanogaster CG17047-P...    44   3e-04
AE013599-1690|AAF58387.1|  325|Drosophila melanogaster CG4734-PA...    32   1.1  
AE014134-2902|AAF53646.1|  364|Drosophila melanogaster CG15153-P...    30   4.6  
AY119017-1|AAM50877.1|  159|Drosophila melanogaster LP04569p pro...    29   8.1  

>AE014296-1547|AAF50347.2|  415|Drosophila melanogaster CG13313-PA
           protein.
          Length = 415

 Score =  226 bits (553), Expect = 3e-59
 Identities = 109/256 (42%), Positives = 148/256 (57%), Gaps = 4/256 (1%)

Query: 46  IFSRTCGSTTNVNNTYFTSXXXXXXXXXXQACTLIVNRCNNNICQLRIDFLDFVIAQPDG 105
           I+ RTCG++T+ NNTYF +            C+++V   +++ICQLR+DFL   +A P G
Sbjct: 124 IYQRTCGASTSYNNTYFYNSNYPAPYGGGGRCSIVVTPPDSSICQLRVDFLSLSLAPPSG 183

Query: 106 DGVCVTDSITITGGNTIVPPLCGDLTGQTIFVDFNGNXXXXXXXXXXXXXXFARRWNMRL 165
           DG C TD++TITGG + VP +CG+  GQ ++VDFNG               F R W  ++
Sbjct: 184 DGSCSTDALTITGGASQVPSICGENAGQHVYVDFNGVSPITISVATSGSYTFNRNWQFQI 243

Query: 166 TQLGCDCPGLAPNGCLQYYTGITDTINSFNYGTGANTLLSASLVTGTRQIANLNYGICIR 225
             LGC    LAP GCLQYY   + T+ SFNY + A + L++  V GTRQ+AN  YGICIR
Sbjct: 244 RMLGCTSATLAPAGCLQYYMPSSGTLASFNYNSAAASALNSIGVQGTRQLANTKYGICIR 303

Query: 226 MEAGYCAIQYAQTANDVFSFTVTGDVEGADNTVLGTAVGAVNDGACVTDFXXXXXXXXXX 285
             AG C+I Y+Q  +D +SFT+T DV   D T+L T+  +V    C TD+          
Sbjct: 304 KAAGMCSITYSQVGSDTYSFTLTNDVGAVDPTLLATS--SVQSQECTTDY--IIIPSPTQ 359

Query: 286 XXXXXGTDRFCGLGFV 301
                 +DRFCGLG V
Sbjct: 360 GGVAMPSDRFCGLGLV 375


>AE014296-1523|AAF50364.1|  401|Drosophila melanogaster CG13310-PA
           protein.
          Length = 401

 Score =  132 bits (318), Expect = 1e-30
 Identities = 79/236 (33%), Positives = 113/236 (47%), Gaps = 18/236 (7%)

Query: 46  IFSRTCGSTTNVNNTYFTSXXXXXXXXXXQACTLIVNRCNNNICQLRIDFLDFVIAQPD- 104
           IF +TCG     N+TYF +           +C + V + + +ICQLR+D   F IA P+ 
Sbjct: 100 IFLQTCGGIIRENSTYFVNPNHPDVYDGTGSCQVTVQKLHPDICQLRLDLDMFSIAPPEA 159

Query: 105 GDGVCVTDSITITGGNTIVPPLCGDLTGQTIFVDFNGNXXXXXXXXXXXXXXFARRWNMR 164
            + +C  D + I+GG+   P +CG  TG  +++D                  F R W +R
Sbjct: 160 ANHLCNQDQLLISGGSP-TPTICGSSTGDHMYIDAGLGQSNPIVLSVITSGSFPRLWRIR 218

Query: 165 LTQLGCDCPGLAPNGCLQYYTGITDTINSFNYGTGANTLLSASLVTGTRQIANLNYGICI 224
           +TQ+ C     A  GCLQYYT I+  + SFNY T            G RQ++N +Y ICI
Sbjct: 219 VTQIHCGSISRADQGCLQYYTAISGRVRSFNYNT-----------VGGRQLSNQDYSICI 267

Query: 225 RMEAGYCAIQYAQTA----NDVFSFTVTGDVEGADNTVLGTAVG-AVNDGACVTDF 275
           R E  +C IQY        N   SFT+TG+      T++G   G   N   C +D+
Sbjct: 268 RNERNFCGIQYNACPDLENNRSRSFTLTGNSNNPVATMVGGGGGMPPNLNGCTSDW 323


>AE014297-2648|AAF55656.1|  555|Drosophila melanogaster CG14280-PA
           protein.
          Length = 555

 Score = 95.9 bits (228), Expect = 8e-20
 Identities = 69/235 (29%), Positives = 100/235 (42%), Gaps = 15/235 (6%)

Query: 46  IFSRTCGSTTNVNNTYFTSXXXXXXXXXXQACTLIVNRCNNNICQLRIDFLDFVIAQPDG 105
           +F   CG  T+    YF S            C LI+N     + QLR+DF  F +++P  
Sbjct: 270 VFVNGCGDVTSQQILYFESPNYPNAVREMMICVLIIN-VKKGVQQLRLDFQMFELSRPS- 327

Query: 106 DGVCVTDSITITGGNTI--VPPLCGDLTGQTIFVDF-NGNXXXXXXXXXXXXXXFARRWN 162
           +G CV D   ++G NT   +P LCG  TGQ I++   + N                R +N
Sbjct: 328 NGDCVDDQFIVSGHNTNFQIPILCGINTGQHIYIHVGDSNEGKVYLSVFMKVSGGGRSFN 387

Query: 163 MRLTQLGCDCPGLAPNGCLQYYTGITDTINSFNYGTGANTLLSASLVTGTRQIANLNYGI 222
           +++TQ+      LAPN CLQY+      I SFNY T  + + +           NLNY I
Sbjct: 388 IKVTQVD---DNLAPNNCLQYFHDAEGVIKSFNYDTDGSIVDNRE----ATYFNNLNYAI 440

Query: 223 CIRMEAGYCAIQY--AQTANDVFSFTVTGDVEGADNTVLGTAVGAVNDGACVTDF 275
           C+      C++ Y   Q   D   F +    E A+N ++           C  DF
Sbjct: 441 CLARLKNVCSVAYNTEQLGGDQPDFQIINKDE-AENDLISDGQAGAGIFNCPDDF 494


>AY052134-1|AAK93558.1|  704|Drosophila melanogaster SD08605p
           protein.
          Length = 704

 Score = 51.2 bits (117), Expect = 2e-06
 Identities = 32/95 (33%), Positives = 45/95 (47%), Gaps = 2/95 (2%)

Query: 46  IFSRTCGSTTNVNNTYFTSXXXXXXX-XXXQACTLIVNRCNNNICQLRIDFLDFVIAQPD 104
           +F  +C +T   N TY  S             C+L V   ++ I Q+RIDF  F + QP+
Sbjct: 201 VFLASCNTTITNNVTYIVSPEFPSFMPSNFTGCSLRVKMMSDEISQVRIDFHHFTLGQPN 260

Query: 105 -GDGVCVTDSITITGGNTIVPPLCGDLTGQTIFVD 138
              GVC  D  +I GG      LCG  +GQ ++ D
Sbjct: 261 RRTGVCEGDVFSIGGGPGGNFSLCGQNSGQHLYYD 295



 Score = 47.2 bits (107), Expect = 4e-05
 Identities = 31/91 (34%), Positives = 41/91 (45%), Gaps = 16/91 (17%)

Query: 159 RRWNMRLTQLGCDCPGLAPNGCLQYYTGITDTINSFNYGTGANTLLSASLVTGTRQIANL 218
           R W M + Q+       AP GCLQY+TG    + +FN+                R +AN 
Sbjct: 345 RIWEMSVVQIPFS--QRAPAGCLQYHTGTEGIMQTFNFAENG------------RHLANQ 390

Query: 219 NYGICIRMEAGYCAIQYAQTANDVFSFTVTG 249
           NY IC+R E   C+I Y     D  SF + G
Sbjct: 391 NYRICVRQELDMCSIMYQPC--DEQSFRIGG 419


>AE014134-536|AAF51163.1|  704|Drosophila melanogaster CG17264-PA
           protein.
          Length = 704

 Score = 51.2 bits (117), Expect = 2e-06
 Identities = 32/95 (33%), Positives = 45/95 (47%), Gaps = 2/95 (2%)

Query: 46  IFSRTCGSTTNVNNTYFTSXXXXXXX-XXXQACTLIVNRCNNNICQLRIDFLDFVIAQPD 104
           +F  +C +T   N TY  S             C+L V   ++ I Q+RIDF  F + QP+
Sbjct: 201 VFLASCNTTITNNVTYIVSPEFPSFMPSNFTGCSLRVKMMSDEISQVRIDFHHFTLGQPN 260

Query: 105 -GDGVCVTDSITITGGNTIVPPLCGDLTGQTIFVD 138
              GVC  D  +I GG      LCG  +GQ ++ D
Sbjct: 261 RRTGVCEGDIFSIGGGPGGNFSLCGQNSGQHLYYD 295



 Score = 47.2 bits (107), Expect = 4e-05
 Identities = 31/91 (34%), Positives = 41/91 (45%), Gaps = 16/91 (17%)

Query: 159 RRWNMRLTQLGCDCPGLAPNGCLQYYTGITDTINSFNYGTGANTLLSASLVTGTRQIANL 218
           R W M + Q+       AP GCLQY+TG    + +FN+                R +AN 
Sbjct: 345 RIWEMSVVQIPFS--QRAPAGCLQYHTGTEGIMQTFNFAENG------------RHLANQ 390

Query: 219 NYGICIRMEAGYCAIQYAQTANDVFSFTVTG 249
           NY IC+R E   C+I Y     D  SF + G
Sbjct: 391 NYRICVRQELDMCSIMYQPC--DEQSFRIGG 419


>AE013599-1691|AAF58386.1|  392|Drosophila melanogaster CG17047-PA
           protein.
          Length = 392

 Score = 44.4 bits (100), Expect = 3e-04
 Identities = 30/82 (36%), Positives = 41/82 (50%), Gaps = 14/82 (17%)

Query: 175 LAPNGCLQYYTGITDTINSFNYGTGANTLLSASLVTGTRQIANLNYGICIRMEAGYCAIQ 234
           LAP GC QYYT ++ TI SFN+ T             +  + +L+Y ICIR       I+
Sbjct: 244 LAPPGCQQYYTDLSGTIRSFNFQTSVT----------SNYMPDLSYNICIRSATSASMIE 293

Query: 235 YAQTANDVFSFTVTGDV-EGAD 255
           Y+ +    FS +V  D  EG D
Sbjct: 294 YSFSK---FSMSVQSDSGEGYD 312



 Score = 39.1 bits (87), Expect = 0.010
 Identities = 25/64 (39%), Positives = 33/64 (51%), Gaps = 5/64 (7%)

Query: 78  TLIVNRCNNNICQLRIDFLDFVIAQP-DGDGVCVTDSITITGGNTIVPPLCGDLTGQTIF 136
           T  +   ++N+ QLRIDF  FV+ QP D DGV         GG      LCG   GQ ++
Sbjct: 114 TYTIEAFSSNVQQLRIDFEQFVMQQPTDVDGVLECQDYFEAGGF----KLCGVNDGQHLY 169

Query: 137 VDFN 140
           + FN
Sbjct: 170 LPFN 173


>AE013599-1690|AAF58387.1|  325|Drosophila melanogaster CG4734-PA
           protein.
          Length = 325

 Score = 32.3 bits (70), Expect = 1.1
 Identities = 47/190 (24%), Positives = 63/190 (33%), Gaps = 51/190 (26%)

Query: 50  TCGSTTNVNNTYFTSXXXXXXXXXXQACTLIVNRCNNNICQLRIDFLDFVIAQP----DG 105
           TCG TT+  N    +          + C   +   +  +CQLRID+    +AQP    D 
Sbjct: 27  TCGGTTSSKNINLVNPTNPP-----RVCEYHIKATSKYVCQLRIDWA-MTLAQPTLETDD 80

Query: 106 DGV----CVTDSITITGGNTIVPPLCGDLTGQTIFVDFNGNXXXXXXXXXXXXXXFA--- 158
            G+    C  D   + G       LCG    Q I+V FN                 A   
Sbjct: 81  SGLTYAECTRDYFEVDG-----LKLCGTEVWQHIYVPFNATDGESLVDLVISLADRAGAS 135

Query: 159 ----RRWNMRLTQLGCDCPG-------------------------LAPNGCLQYYTGITD 189
                 W+M +TQL C                             +AP GC QY+     
Sbjct: 136 GLPTAYWDMTVTQLECPAGASVRSLDLEDDVTIESRASTIKDGFFVAPPGCRQYFPEAKG 195

Query: 190 TINSFNYGTG 199
            + SFNY  G
Sbjct: 196 AVKSFNYNDG 205


>AE014134-2902|AAF53646.1|  364|Drosophila melanogaster CG15153-PA
           protein.
          Length = 364

 Score = 30.3 bits (65), Expect = 4.6
 Identities = 15/29 (51%), Positives = 16/29 (55%)

Query: 171 DCPGLAPNGCLQYYTGITDTINSFNYGTG 199
           D   LAP GC QYY   T  I SFN+  G
Sbjct: 208 DLEMLAPLGCDQYYRTTTGGIVSFNFAGG 236



 Score = 29.9 bits (64), Expect = 6.1
 Identities = 26/99 (26%), Positives = 37/99 (37%), Gaps = 11/99 (11%)

Query: 77  CTLIVNRCNNNICQLRIDFLDFVIAQPD---GDGV--CVTDSITITGGNTIVPPLCGDLT 131
           C   V   +  +CQ+R+DF    + QP      GV  CV D + I         LCG  +
Sbjct: 53  CQYRVAPWSGQVCQVRVDFERLELPQPQLNANSGVLECV-DFLQIQHFR-----LCGRNS 106

Query: 132 GQTIFVDFNGNXXXXXXXXXXXXXXFARRWNMRLTQLGC 170
           GQ +++                       W + LTQL C
Sbjct: 107 GQHLYIPIRRGQELQLLFRLATSLGRQSTWQLTLTQLEC 145


>AY119017-1|AAM50877.1|  159|Drosophila melanogaster LP04569p
           protein.
          Length = 159

 Score = 29.5 bits (63), Expect = 8.1
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 175 LAPNGCLQYYTGITDTINSFNYGTG 199
           +AP GC QY+      + SFNY  G
Sbjct: 113 VAPPGCRQYFPEAKGAVKSFNYNDG 137


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.321    0.137    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,293,523
Number of Sequences: 52641
Number of extensions: 660864
Number of successful extensions: 1182
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1159
Number of HSP's gapped (non-prelim): 14
length of query: 382
length of database: 24,830,863
effective HSP length: 86
effective length of query: 296
effective length of database: 20,303,737
effective search space: 6009906152
effective search space used: 6009906152
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 63 (29.5 bits)