Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000499-TA|BGIBMGA000499-PA|undefined
         (265 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     22   5.5  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    22   5.5  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           22   5.5  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    22   5.5  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   7.2  
AJ888865-1|CAI61930.1|  108|Tribolium castaneum modulator of act...    21   7.2  
AJ622939-1|CAF22091.1|  108|Tribolium castaneum ETS activity mod...    21   7.2  
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    21   9.6  

>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/19 (42%), Positives = 10/19 (52%)

Query: 141 KYPPSRLVYMSPLTPPGSD 159
           K+PPS     +   PPG D
Sbjct: 30  KFPPSEEYNQNSYIPPGGD 48


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/19 (42%), Positives = 10/19 (52%)

Query: 141 KYPPSRLVYMSPLTPPGSD 159
           K+PPS     +   PPG D
Sbjct: 30  KFPPSEEYNQNSYIPPGGD 48


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/19 (42%), Positives = 10/19 (52%)

Query: 141 KYPPSRLVYMSPLTPPGSD 159
           K+PPS     +   PPG D
Sbjct: 30  KFPPSEEYNQNSYIPPGGD 48


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/19 (42%), Positives = 10/19 (52%)

Query: 141 KYPPSRLVYMSPLTPPGSD 159
           K+PPS     +   PPG D
Sbjct: 30  KFPPSEEYNQNSYIPPGGD 48


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/12 (58%), Positives = 8/12 (66%)

Query: 192 PHPGSHLHHQQT 203
           P   SH+HH QT
Sbjct: 128 PTDNSHVHHHQT 139


>AJ888865-1|CAI61930.1|  108|Tribolium castaneum modulator of
          activity of ets genes protein.
          Length = 108

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 11/42 (26%), Positives = 18/42 (42%)

Query: 5  DESNAPPSTVQVNNRKTSELESLLCKQEGASLAPAHMDLFDG 46
          DE N P    Q      ++  +L+ +Q G    P+   L +G
Sbjct: 28 DEDNLPKDPRQWTREHVAQWINLVTQQHGLPEVPSSRFLMNG 69


>AJ622939-1|CAF22091.1|  108|Tribolium castaneum ETS activity
          modulator protein.
          Length = 108

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 11/42 (26%), Positives = 18/42 (42%)

Query: 5  DESNAPPSTVQVNNRKTSELESLLCKQEGASLAPAHMDLFDG 46
          DE N P    Q      ++  +L+ +Q G    P+   L +G
Sbjct: 28 DEDNLPKDPRQWTREHVAQWINLVTQQHGLPEVPSSRFLMNG 69


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/26 (30%), Positives = 13/26 (50%)

Query: 231 SRLAPPPPMKYNRRNNPELEKRRVHH 256
           S + PPPP + +  N P+   +   H
Sbjct: 211 STIPPPPPEEDDDSNIPQNNPKNKQH 236


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.315    0.132    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,069
Number of Sequences: 317
Number of extensions: 1789
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 8
length of query: 265
length of database: 114,650
effective HSP length: 56
effective length of query: 209
effective length of database: 96,898
effective search space: 20251682
effective search space used: 20251682
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 42 (21.0 bits)