Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000499-TA|BGIBMGA000499-PA|undefined
         (265 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  

>SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3669

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 1/77 (1%)

Query: 6    ESNAPPSTVQVNNRKTSELESLLCKQEGASLAPAHMDLFDGGTSSRDDAFLRPALWEDIA 65
            E  + PS + +N R+ S+  S L +Q+G +  P  + LF  G   + +     A  ED  
Sbjct: 2173 ERRSLPSRLVINKRRFSKKNSRLARQQGGNRTPRRL-LFPKGALLKPERRRLSAGTEDAL 2231

Query: 66   SSIRNIDPENANMLAPL 82
             ++     + A    PL
Sbjct: 2232 VAVTRCAEDAATPAHPL 2248


>SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4856

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 13/45 (28%), Positives = 27/45 (60%), Gaps = 2/45 (4%)

Query: 11   PSTVQVNNRKTSELESLLC--KQEGASLAPAHMDLFDGGTSSRDD 53
            P+ V V     ++L++LL   ++EG ++ P+H  + + G++S  D
Sbjct: 4404 PNVVHVGKDHETDLDNLLSHLEEEGVAIHPSHQGVVEKGSASPRD 4448


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.315    0.132    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,744,762
Number of Sequences: 59808
Number of extensions: 248644
Number of successful extensions: 451
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 451
Number of HSP's gapped (non-prelim): 2
length of query: 265
length of database: 16,821,457
effective HSP length: 81
effective length of query: 184
effective length of database: 11,977,009
effective search space: 2203769656
effective search space used: 2203769656
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 59 (27.9 bits)