Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000499-TA|BGIBMGA000499-PA|undefined
         (265 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g14440.1 68415.m01616 leucine-rich repeat protein kinase, put...    28   5.6  
At5g47430.1 68418.m05844 expressed protein                             27   9.8  

>At2g14440.1 68415.m01616 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 886

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 3/71 (4%)

Query: 44  FDG-GTSSRDDAFLRPALWEDIASSIRNIDPENANMLAPLGATHVKXXXXXXXXXXXXTP 102
           +DG  TS R D FL P +W  +   ++ +D  +  +   +  T               TP
Sbjct: 115 YDGLNTSPRFDLFLGPNIWTSV--DVQKVDGGDGVIEEIIHVTRCNILDICLVKTGTTTP 172

Query: 103 LLSPLEIKTER 113
           ++S +E++  R
Sbjct: 173 MISAIELRPLR 183


>At5g47430.1 68418.m05844 expressed protein 
          Length = 879

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/19 (63%), Positives = 14/19 (73%), Gaps = 1/19 (5%)

Query: 231 SRLAPPPPMK-YNRRNNPE 248
           SR APPPP+  Y+RR  PE
Sbjct: 652 SRQAPPPPIHDYDRRRRPE 670


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.315    0.132    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,380,756
Number of Sequences: 28952
Number of extensions: 174141
Number of successful extensions: 528
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 528
Number of HSP's gapped (non-prelim): 2
length of query: 265
length of database: 12,070,560
effective HSP length: 80
effective length of query: 185
effective length of database: 9,754,400
effective search space: 1804564000
effective search space used: 1804564000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 58 (27.5 bits)