GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000499-TA|BGIBMGA000499-PA|undefined
         (265 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0917 - 22609543-22609852,22609925-22610266,22610596-226108...    29   5.1  
10_08_0080 - 14707309-14707420,14707799-14707846,14708418-147085...    28   6.7  
07_03_0100 + 13389899-13390219,13390723-13390841,13391220-133913...    28   6.7  
07_01_0061 - 451093-451377,451501-451596,451714-451824                 28   6.7  
03_03_0247 - 15801705-15802478,15802558-15802728,15802886-15803047     28   6.7  
02_05_1331 + 35736543-35736638,35737407-35737525,35737670-357377...    28   8.9  

>08_02_0917 -
          22609543-22609852,22609925-22610266,22610596-22610858,
          22611318-22612349
          Length = 648

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 2/45 (4%)

Query: 25 ESLLCKQEGASLAPAHMDLFDGGTSSRDDAFLRPALWEDIASSIR 69
          E  +   + A  A A MD F G  S+R  A +RPA  +D+AS+IR
Sbjct: 20 EPAVAAVDAAEFAAA-MD-FGGLVSARPAAVVRPASSDDVASAIR 62


>10_08_0080 -
           14707309-14707420,14707799-14707846,14708418-14708543,
           14708586-14708743
          Length = 147

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 231 SRLAPPPPMKYNRRNNPELEKRRVHHCDFMG 261
           S L PPP  + N R +P L++RR +     G
Sbjct: 14  SLLLPPPLSRVNARRSPSLDQRRRYRASTAG 44


>07_03_0100 +
           13389899-13390219,13390723-13390841,13391220-13391315,
           13391481-13391553,13392055-13392123
          Length = 225

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 231 SRLAPPPPMKYNRRNNPELEKRRVHHCDFMG 261
           S L PPP  + N R +P L++RR +     G
Sbjct: 14  SLLLPPPLSRVNARRSPSLDQRRRYRASTAG 44


>07_01_0061 - 451093-451377,451501-451596,451714-451824
          Length = 163

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/40 (35%), Positives = 21/40 (52%)

Query: 36  LAPAHMDLFDGGTSSRDDAFLRPALWEDIASSIRNIDPEN 75
           +AP  + +FD  T SRDD      +  +    + N+DPEN
Sbjct: 64  IAPIKLGVFDKDTFSRDDPMGDAEIDLEPFMEVLNMDPEN 103


>03_03_0247 - 15801705-15802478,15802558-15802728,15802886-15803047
          Length = 368

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/38 (34%), Positives = 19/38 (50%)

Query: 3   MYDESNAPPSTVQVNNRKTSELESLLCKQEGASLAPAH 40
           +   ++ PP  +Q   R+ S   SLL K  GA + P H
Sbjct: 137 LLSHASPPPEQLQRRRRRGSPFPSLLVKWLGAPMRPEH 174


>02_05_1331 +
           35736543-35736638,35737407-35737525,35737670-35737715,
           35738117-35738172,35738452-35738547,35738844-35738961,
           35739406-35739672,35740023-35740124,35740302-35740659,
           35740750-35740863,35741045-35741676,35741895-35742103,
           35742597-35742819,35743419-35743538,35743888-35743914,
           35744281-35745045,35745431-35748511
          Length = 2142

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 6/54 (11%)

Query: 18  NRKTSELESLLCKQEGASLAPAHMDLFDGGTSSRDDAFLRPA--LWEDIASSIR 69
           N++ SEL+  LC    + LAP    L +GG        + PA  LW D  + IR
Sbjct: 202 NKRKSELQHALCNMLSSILAP----LAEGGKHHWPPLGVEPALSLWYDAVARIR 251


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.315    0.132    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,193,711
Number of Sequences: 37544
Number of extensions: 246140
Number of successful extensions: 563
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 557
Number of HSP's gapped (non-prelim): 9
length of query: 265
length of database: 14,793,348
effective HSP length: 81
effective length of query: 184
effective length of database: 11,752,284
effective search space: 2162420256
effective search space used: 2162420256
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 59 (27.9 bits)