GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000499-TA|BGIBMGA000499-PA|undefined
         (265 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132862-2|CAB70224.1| 1019|Caenorhabditis elegans Hypothetical ...    28   6.0  
Z82286-4|CAB05310.1|  468|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>AL132862-2|CAB70224.1| 1019|Caenorhabditis elegans Hypothetical
           protein Y73F8A.5 protein.
          Length = 1019

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query: 231 SRLAPPPPMKYNRRNNPELEKRRVHHCDF 259
           ++L PP P K   + NP +EK ++  C+F
Sbjct: 359 TKLPPPTPWKTCPKCNPGMEKNKLGVCEF 387


>Z82286-4|CAB05310.1|  468|Caenorhabditis elegans Hypothetical
           protein W02A2.7 protein.
          Length = 468

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/18 (55%), Positives = 13/18 (72%)

Query: 236 PPPMKYNRRNNPELEKRR 253
           PP ++ NRR NP + KRR
Sbjct: 432 PPHLRRNRRENPPMNKRR 449


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.315    0.132    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,657,740
Number of Sequences: 27539
Number of extensions: 186056
Number of successful extensions: 391
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 389
Number of HSP's gapped (non-prelim): 2
length of query: 265
length of database: 12,573,161
effective HSP length: 80
effective length of query: 185
effective length of database: 10,370,041
effective search space: 1918457585
effective search space used: 1918457585
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 59 (27.9 bits)