GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000499-TA|BGIBMGA000499-PA|undefined
         (265 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    24   1.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   4.9  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   6.5  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
          kinase foraging protein.
          Length = 678

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 14 VQVNNRKTSELESLLCKQEG-ASLAPAHMDLF 44
          ++V + K  ELE+LLC+++       +H+D F
Sbjct: 11 LRVKDEKIVELEALLCRRDAEIQELRSHLDKF 42


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 11/35 (31%), Positives = 15/35 (42%)

Query: 11  PSTVQVNNRKTSELESLLCKQEGASLAPAHMDLFD 45
           P  V + +  T+  E  LC+ E    A  H   FD
Sbjct: 719 PRGVAIVSASTARSEQFLCRYEAHCFALCHCCDFD 753


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/13 (61%), Positives = 8/13 (61%)

Query: 189 QVQPHPGSHLHHQ 201
           Q  PH GS  HHQ
Sbjct: 325 QYHPHRGSSPHHQ 337


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.132    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,716
Number of Sequences: 429
Number of extensions: 2277
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 3
length of query: 265
length of database: 140,377
effective HSP length: 57
effective length of query: 208
effective length of database: 115,924
effective search space: 24112192
effective search space used: 24112192
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 43 (21.4 bits)