GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000498-TA|BGIBMGA000498-PA|undefined
         (271 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF260820-1|AAG02018.1|  139|Tribolium castaneum alpha-esterase l...    24   1.1  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    23   1.8  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    23   1.8  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    23   1.8  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    21   7.4  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    21   9.8  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    21   9.8  
AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.           21   9.8  

>AF260820-1|AAG02018.1|  139|Tribolium castaneum alpha-esterase like
           protein E1 protein.
          Length = 139

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/21 (47%), Positives = 12/21 (57%)

Query: 96  PCYGSMMFPQSYKAGSEPALV 116
           PCYG   F ++   GSE  LV
Sbjct: 37  PCYGRHFFKKNLIVGSENCLV 57


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 11/51 (21%), Positives = 21/51 (41%)

Query: 38  NVSEADASHGTIKDAPSEENNLMVMSPSYMSDASDAFTNSYHRTSQLAHGG 88
           N+   ++ +G +KD     N L        + A + F  ++     + HGG
Sbjct: 64  NLKWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFDGTFQTNVVVKHGG 114


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 11/51 (21%), Positives = 21/51 (41%)

Query: 38  NVSEADASHGTIKDAPSEENNLMVMSPSYMSDASDAFTNSYHRTSQLAHGG 88
           N+   ++ +G +KD     N L        + A + F  ++     + HGG
Sbjct: 64  NLKWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFDGTFQTNVVVKHGG 114


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 11/51 (21%), Positives = 21/51 (41%)

Query: 38  NVSEADASHGTIKDAPSEENNLMVMSPSYMSDASDAFTNSYHRTSQLAHGG 88
           N+   ++ +G +KD     N L        + A + F  ++     + HGG
Sbjct: 64  NLKWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFDGTFQTNVVVKHGG 114


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/30 (30%), Positives = 15/30 (50%)

Query: 213 QQMQRLPTQVSYDRPAQRSISGYSQTQPPP 242
           Q+++    ++ YD P + SIS    T   P
Sbjct: 881 QELEGYKVKLEYDGPYETSISSGQYTTKDP 910


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 10/51 (19%), Positives = 20/51 (39%)

Query: 38  NVSEADASHGTIKDAPSEENNLMVMSPSYMSDASDAFTNSYHRTSQLAHGG 88
           N+   ++ +G +KD     N L        + A + F  ++     + H G
Sbjct: 64  NLKWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFDGTFQTNVVVKHNG 114


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 10/51 (19%), Positives = 20/51 (39%)

Query: 38  NVSEADASHGTIKDAPSEENNLMVMSPSYMSDASDAFTNSYHRTSQLAHGG 88
           N+   ++ +G +KD     N L        + A + F  ++     + H G
Sbjct: 64  NLKWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFDGTFQTNVVVKHNG 114


>AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.
          Length = 257

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 12/35 (34%), Positives = 16/35 (45%)

Query: 61  VMSPSYMSDASDAFTNSYHRTSQLAHGGVANVNEH 95
           + SPS   D S   T   H T Q+      NV++H
Sbjct: 132 IPSPSTTDDLSTNPTPPPHYTYQIIPYEALNVDDH 166


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.310    0.125    0.350 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,566
Number of Sequences: 317
Number of extensions: 1934
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 271
length of database: 114,650
effective HSP length: 56
effective length of query: 215
effective length of database: 96,898
effective search space: 20833070
effective search space used: 20833070
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 42 (21.0 bits)