Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000497-TA|BGIBMGA000497-PA|IPR011598|Helix-loop-helix
DNA-binding, IPR001092|Basic helix-loop-helix dimerisation region bHLH
(233 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37377| Best HMM Match : No HMM Matches (HMM E-Value=.) 63 2e-10
SB_12347| Best HMM Match : HLH (HMM E-Value=3.8e-21) 43 2e-04
SB_56922| Best HMM Match : HLH (HMM E-Value=1.9e-21) 38 0.007
SB_32910| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.012
SB_52528| Best HMM Match : HLH (HMM E-Value=3.9e-18) 36 0.029
SB_56921| Best HMM Match : HLH (HMM E-Value=9.9e-19) 36 0.038
SB_43185| Best HMM Match : HLH (HMM E-Value=4e-20) 36 0.038
SB_6832| Best HMM Match : HLH (HMM E-Value=2.4e-14) 34 0.087
SB_6246| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.15
SB_28433| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.15
SB_27345| Best HMM Match : HLH (HMM E-Value=1.2e-20) 33 0.27
SB_535| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.27
SB_47522| Best HMM Match : HLH (HMM E-Value=1e-17) 32 0.35
SB_46206| Best HMM Match : HLH (HMM E-Value=5e-18) 32 0.35
SB_47523| Best HMM Match : HLH (HMM E-Value=1.1e-18) 31 0.62
SB_7592| Best HMM Match : PI-PLC-Y (HMM E-Value=1.1e-33) 31 0.81
SB_49937| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_58088| Best HMM Match : HLH (HMM E-Value=3e-12) 29 3.3
SB_2208| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_35548| Best HMM Match : BPL_LipA_LipB (HMM E-Value=1.5e-27) 28 7.6
SB_18155| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_43059| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
>SB_37377| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 181
Score = 63.3 bits (147), Expect = 2e-10
Identities = 33/66 (50%), Positives = 42/66 (63%), Gaps = 6/66 (9%)
Query: 104 VQRAAANVRERRRMLRSGPNCSINSAFDELRVHVPTFPYEKRLSKIDTXXXXXXXXXXXX 163
VQR AAN+RER+RM SIN AF+ LR H+PT PYEKRLSK+DT
Sbjct: 43 VQRHAANLRERKRMQ------SINEAFEGLRKHIPTLPYEKRLSKVDTLRLAIGYIGFLT 96
Query: 164 EVLDAD 169
E++++D
Sbjct: 97 EMINSD 102
>SB_12347| Best HMM Match : HLH (HMM E-Value=3.8e-21)
Length = 143
Score = 43.2 bits (97), Expect = 2e-04
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 6/47 (12%)
Query: 105 QRAAANVRERRRMLRSGPNCSINSAFDELRVHVPTFPYEKRLSKIDT 151
QR AAN RER R S+N+AF+ LR+ +PT P +++LSKI+T
Sbjct: 51 QRQAANARERNR------THSVNAAFNALRLLIPTEPSDRKLSKIET 91
>SB_56922| Best HMM Match : HLH (HMM E-Value=1.9e-21)
Length = 157
Score = 37.9 bits (84), Expect = 0.007
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 105 QRAAANVRERRRMLRSGPNCSINSAFDELRVHVPTFPYEKRLSKIDTXXXXXXXXXXXXE 164
+R AN +ER+R ++N+AF++LR H+P P + +LSKI T +
Sbjct: 32 KRYTANRKERKRTQ------TMNTAFEDLRNHIPNVPPDTKLSKIKTLRLAISYIRYLMD 85
Query: 165 VLDADYD 171
+L+ D
Sbjct: 86 ILEESKD 92
>SB_32910| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 155
Score = 37.1 bits (82), Expect = 0.012
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 6/45 (13%)
Query: 107 AAANVRERRRMLRSGPNCSINSAFDELRVHVPTFPYEKRLSKIDT 151
A N RER R+ +N F LR H+P FP +K+LSK++T
Sbjct: 73 ARRNERERNRVRL------VNDGFSSLRQHIPYFPEKKKLSKVET 111
>SB_52528| Best HMM Match : HLH (HMM E-Value=3.9e-18)
Length = 138
Score = 35.9 bits (79), Expect = 0.029
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 6/47 (12%)
Query: 105 QRAAANVRERRRMLRSGPNCSINSAFDELRVHVPTFPYEKRLSKIDT 151
QR AN RER R+ + +N+AF+ LR +P EK+ SKIDT
Sbjct: 36 QRRTANERERNRVQQ------VNAAFETLRNKIPLRALEKKPSKIDT 76
>SB_56921| Best HMM Match : HLH (HMM E-Value=9.9e-19)
Length = 200
Score = 35.5 bits (78), Expect = 0.038
Identities = 15/27 (55%), Positives = 20/27 (74%)
Query: 125 SINSAFDELRVHVPTFPYEKRLSKIDT 151
+IN+AF ELR H+P P + +LSKI T
Sbjct: 55 NINAAFAELRKHIPNVPSDTKLSKIKT 81
>SB_43185| Best HMM Match : HLH (HMM E-Value=4e-20)
Length = 232
Score = 35.5 bits (78), Expect = 0.038
Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 6/45 (13%)
Query: 107 AAANVRERRRMLRSGPNCSINSAFDELRVHVPTFPYEKRLSKIDT 151
A N RER+R+ +N F LR HVPT P K+LSK+ T
Sbjct: 67 ARRNARERKRVKL------VNDGFMRLRKHVPTDPKNKKLSKVKT 105
>SB_6832| Best HMM Match : HLH (HMM E-Value=2.4e-14)
Length = 189
Score = 34.3 bits (75), Expect = 0.087
Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Query: 105 QRAAANVRERRRMLRSGPNCSINSAFDELRVHVPTFPYEKRLSKIDTXXXXXXXXXXXXE 164
QR AN RER R+ +N+ D LR +P FP EK+ SK +T E
Sbjct: 63 QRRLANTRERHRVQ------VLNAYIDRLRHLIPLFPGEKKPSKTETVHLAALYIEHMTE 116
Query: 165 VLDADYDP 172
++ P
Sbjct: 117 IIQNTEKP 124
>SB_6246| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 135
Score = 33.5 bits (73), Expect = 0.15
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Query: 103 RVQRAAANVRERRRMLRSGPNCSINSAFDELRVHVPTFPYEKRLSKIDTXXXXXXXXXXX 162
R++R AN RERRR+ SIN A + LR VP +L+K+DT
Sbjct: 60 RLRRLRANDRERRRIQ------SINVALEALRKAVPNTRSSGKLTKLDTLLLARDYIKHL 113
Query: 163 XEVLDADYD 171
E+L D
Sbjct: 114 NEILQRTRD 122
>SB_28433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 536
Score = 33.5 bits (73), Expect = 0.15
Identities = 13/26 (50%), Positives = 21/26 (80%)
Query: 125 SINSAFDELRVHVPTFPYEKRLSKID 150
S+N AF E+R +PT+P +K+LSK++
Sbjct: 453 SVNLAFAEIRKLLPTYPPDKKLSKVE 478
>SB_27345| Best HMM Match : HLH (HMM E-Value=1.2e-20)
Length = 153
Score = 32.7 bits (71), Expect = 0.27
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 126 INSAFDELRVHVPTFPYEKRLSKIDT 151
++ F LR H+PT P K+LSK++T
Sbjct: 87 VSDGFAALRKHIPTTPVNKKLSKVET 112
>SB_535| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 131
Score = 32.7 bits (71), Expect = 0.27
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Query: 102 YRVQRAAANVRERRRMLRSGPNCSINSAFDELRVHVPTFPYEKRLSKIDTXXXXXXXXXX 161
Y ++ A R R +R +N + LR H+P P +KR+SK++T
Sbjct: 48 YNLEPAFIRKRNERERIRVR---HVNEGYARLREHLPEEPSDKRMSKVETLRAAIRYIKH 104
Query: 162 XXEVLDAD 169
+L A+
Sbjct: 105 LESLLQAE 112
>SB_47522| Best HMM Match : HLH (HMM E-Value=1e-17)
Length = 213
Score = 32.3 bits (70), Expect = 0.35
Identities = 29/89 (32%), Positives = 36/89 (40%), Gaps = 8/89 (8%)
Query: 103 RVQRAAANVRERRRMLRSGPNCSINSAFDELRVHVPTFPY--EKRLSKIDTXXXXXXXXX 160
R R A RER RM S+N AFD LR +P Y E++ SKI T
Sbjct: 66 RSNRECATARERSRMH------SLNDAFDSLRKAIPKTNYNQEEKPSKIATLRLAIHYIA 119
Query: 161 XXXEVLDADYDPLTYVEKCLRGEIKADRA 189
++L E GE +A RA
Sbjct: 120 ALSDILGKPIPEPEPKEARRDGESRAKRA 148
>SB_46206| Best HMM Match : HLH (HMM E-Value=5e-18)
Length = 400
Score = 32.3 bits (70), Expect = 0.35
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 6/48 (12%)
Query: 103 RVQRAAANVRERRRMLRSGPNCSINSAFDELRVHVPTFPYEKRLSKID 150
R++R AN RERRRM S+N A D L+ +P ++R++K++
Sbjct: 302 RIRRLRANDRERRRMK------SLNRALDSLKKCIPVPQSKRRVTKLE 343
>SB_47523| Best HMM Match : HLH (HMM E-Value=1.1e-18)
Length = 207
Score = 31.5 bits (68), Expect = 0.62
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
Query: 103 RVQRAAANVRERRRMLRSGPNCSINSAFDELRVHVPTFPYEKRLSKIDTXXXXXXXXXXX 162
R +R AN RER R+ +++ AF+ LR VP++ +++LSK+
Sbjct: 43 RSRRLIANARERSRIH------TMSEAFESLRKAVPSYSQDQKLSKLAILRLATSYISAL 96
Query: 163 XEVLDAD 169
++ ++D
Sbjct: 97 ADLTESD 103
>SB_7592| Best HMM Match : PI-PLC-Y (HMM E-Value=1.1e-33)
Length = 997
Score = 31.1 bits (67), Expect = 0.81
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 73 QLHPVFFVTYKDSLLEAAAEPDYQCGGSPYRVQRAAANVRERRRMLRSGPNCSINSA--F 130
Q H + + + LLEAAAE Q ++Q AAA E + +LR + N A
Sbjct: 384 QRHLLKILKHGQVLLEAAAESQEQLNEWLVKLQEAAATAPEEKEVLRKQQSMKQNIAQEL 443
Query: 131 DELRVHVPTFPYE 143
+L V+ P++
Sbjct: 444 SDLIVYCQPVPFD 456
>SB_49937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 850
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/36 (41%), Positives = 17/36 (47%)
Query: 10 DSSTSPPLSDSRRLDYSGLKFSYVDGSDDESASLHS 45
DS P LD +GL S VD D+E A HS
Sbjct: 109 DSKHGHPPDHQHELDLTGLVESIVDSDDEEEAESHS 144
>SB_58088| Best HMM Match : HLH (HMM E-Value=3e-12)
Length = 297
Score = 29.1 bits (62), Expect = 3.3
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Query: 105 QRAAANVRERRRMLRSGPNCSINSAFDELRVHVPTFPYEKRLSKIDTXXXXXXXXXXXXE 164
QR AAN RERRR+ +N AF EL+ +P + +SKID E
Sbjct: 60 QRRAANERERRRIQ------GVNRAFVELKNSLPVSHMD--ISKIDILRVAAQWIDHLSE 111
Query: 165 VLDAD 169
+L D
Sbjct: 112 LLHQD 116
>SB_2208| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 502
Score = 29.1 bits (62), Expect = 3.3
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Query: 105 QRAAANVRERRRMLRSGPNCSINSAFDELRVHVPTFPYEKRLSKIDTXXXXXXXXXXXXE 164
QR AAN RERRR+ +N AF EL+ +P + +SKID E
Sbjct: 331 QRRAANERERRRIQ------GVNRAFVELKNSLPVSHMD--ISKIDILRVAAQWIDHLSE 382
Query: 165 VLDAD 169
+L D
Sbjct: 383 LLHQD 387
>SB_35548| Best HMM Match : BPL_LipA_LipB (HMM E-Value=1.5e-27)
Length = 378
Score = 27.9 bits (59), Expect = 7.6
Identities = 26/92 (28%), Positives = 37/92 (40%), Gaps = 9/92 (9%)
Query: 85 SLLEAAAEPDYQCGGSPYRVQRAAANVRERRRMLRSGPN-----CSINSAFDELRVHVPT 139
SL E AAE C R + R R LR +NSAFD LR +P
Sbjct: 263 SLFEKAAEITEDCPRESKRTKLTVPPTVRRFRQLRRNARERERQGRLNSAFDVLRGVIPD 322
Query: 140 F----PYEKRLSKIDTXXXXXXXXXXXXEVLD 167
+ E++L++I+T E+L+
Sbjct: 323 YLSGKGPERKLTQIETLRLATHYIMALSEMLE 354
>SB_18155| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 455
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 33 VDGSDDESASLHSELPSCVYAAARSR-LQLP 62
VD DD +AS E P+ ++AAAR R L LP
Sbjct: 59 VDDDDDNNASGAPERPNGIHAAARDRQLILP 89
>SB_43059| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 722
Score = 27.9 bits (59), Expect = 7.6
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 2 SGARTQLADSSTSPPLSDSRRLDYSGLKFSYVDGSDDESASLHSELPSCVYAAAR 56
+GAR D S++ L ++ Y+G + SY D S SASL Y AR
Sbjct: 297 TGARDSCGDESSASLLPRKQQKTYTGARDSYGDAS---SASLLPRKQQKTYTGAR 348
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.317 0.130 0.390
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,495,137
Number of Sequences: 59808
Number of extensions: 274604
Number of successful extensions: 579
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 560
Number of HSP's gapped (non-prelim): 25
length of query: 233
length of database: 16,821,457
effective HSP length: 80
effective length of query: 153
effective length of database: 12,036,817
effective search space: 1841633001
effective search space used: 1841633001
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)
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